logo

Genes within 1Mb (chr1:40256448:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -985706 sc-eQTL 5.91e-01 -0.105 0.195 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 372937 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -61365 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -435200 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -88402 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 564266 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -1788 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 679658 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 564963 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 95061 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -275125 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 216215 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 158721 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -252293 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -723240 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -605915 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -193654 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -220842 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -1519 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -435618 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000010803 SCMH1 -985706 sc-eQTL 2.47e-01 -0.226 0.194 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 372937 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -435200 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -88402 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 564266 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -1788 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 679658 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 467583 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 95061 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -275125 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 216215 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 158721 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -252293 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -723240 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -605915 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -220842 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -1519 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -435618 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000010803 SCMH1 -985706 sc-eQTL 2.83e-01 -0.26 0.241 0.07 PB L2
ENSG00000043514 TRIT1 372937 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -61365 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -435200 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -88402 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 564266 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -1788 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 679658 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 467583 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 95061 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -275125 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 216215 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 158721 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -252293 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -723240 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -605915 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -220842 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 485100 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -1519 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -435618 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000010803 SCMH1 -985706 sc-eQTL 8.82e-01 0.0265 0.179 0.05 Pro_T L2
ENSG00000043514 TRIT1 372937 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -435200 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -88402 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 564266 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -1788 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 679658 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 467583 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 95061 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -275125 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 216215 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 158721 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -252293 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 301336 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -723240 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -605915 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -193654 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -220842 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 485100 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -1519 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -435618 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -435241 eQTL 0.0477 -0.0412 0.0208 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 564963 eQTL 0.0229 -0.0771 0.0338 0.0 0.0 0.0491
ENSG00000117000 RLF 95061 eQTL 1.10e-14 0.202 0.0257 0.0072 0.00717 0.0491
ENSG00000117013 KCNQ4 -527339 eQTL 1.21e-02 -0.203 0.0806 0.0 0.0 0.0491
ENSG00000131238 PPT1 158721 eQTL 1.38e-27 0.703 0.0626 0.0 0.0 0.0491
ENSG00000164002 EXO5 -252293 eQTL 7.08e-03 -0.132 0.049 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -193659 eQTL 0.0405 -0.127 0.062 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 -1519 eQTL 1.1e-08 -0.257 0.0445 0.0 0.00828 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -1788 4.67e-05 3.82e-05 7.01e-06 1.72e-05 7.07e-06 1.79e-05 5.2e-05 6.27e-06 4.05e-05 1.93e-05 4.8e-05 2.17e-05 5.71e-05 1.71e-05 8.15e-06 2.6e-05 2.21e-05 3.05e-05 9.5e-06 8.12e-06 1.95e-05 4.32e-05 3.71e-05 1.07e-05 5.52e-05 1.05e-05 1.83e-05 1.61e-05 3.76e-05 3.09e-05 2.59e-05 1.99e-06 3.87e-06 7.93e-06 1.37e-05 7.28e-06 3.68e-06 3.71e-06 5.89e-06 3.92e-06 1.77e-06 4.41e-05 4.58e-06 4.41e-07 2.89e-06 4.93e-06 4.88e-06 2.11e-06 1.56e-06
ENSG00000117000 RLF 95061 1.08e-05 1.54e-05 1.74e-06 7.79e-06 2.4e-06 3.93e-06 1.24e-05 1.93e-06 1.15e-05 5.52e-06 1.28e-05 5.57e-06 1.8e-05 3.97e-06 3.67e-06 7.69e-06 4.98e-06 8.13e-06 2.58e-06 2.82e-06 5.07e-06 1.26e-05 9.02e-06 3.24e-06 1.66e-05 4.41e-06 6.69e-06 4.73e-06 1.26e-05 7.98e-06 6.63e-06 1.02e-06 1.31e-06 3.36e-06 4.83e-06 2.19e-06 1.87e-06 1.84e-06 1.79e-06 9.95e-07 8.22e-07 1.67e-05 1.44e-06 3.57e-07 8.1e-07 1.96e-06 1.6e-06 8.34e-07 4.52e-07
ENSG00000117016 \N -409234 1.09e-06 1.01e-06 2.84e-07 3.17e-07 1.56e-07 2.67e-07 6.54e-07 2.04e-07 8.46e-07 3.12e-07 9.46e-07 5.01e-07 1.37e-06 1.97e-07 4.3e-07 5.49e-07 5.63e-07 4.52e-07 4.49e-07 1.73e-07 2.55e-07 7.58e-07 4.01e-07 2.95e-07 1.14e-06 2.53e-07 4.97e-07 3.24e-07 5.7e-07 5.28e-07 3.95e-07 5.4e-08 4.74e-08 1.5e-07 3.71e-07 1.44e-07 2.04e-07 1.06e-07 6.29e-08 2.65e-08 6.07e-08 1.19e-06 6.28e-08 1.89e-07 1.59e-07 4.43e-08 1.11e-07 8.31e-08 2.62e-07
ENSG00000131238 PPT1 158721 5.59e-06 9.44e-06 7.77e-07 3.85e-06 1.64e-06 1.39e-06 7.6e-06 1.07e-06 4.88e-06 2.92e-06 6.38e-06 3.28e-06 9.86e-06 1.89e-06 1e-06 4.59e-06 1.97e-06 3.95e-06 1.51e-06 1.37e-06 2.79e-06 7.55e-06 4.67e-06 1.48e-06 8.46e-06 2.16e-06 3.05e-06 1.65e-06 5.89e-06 4.33e-06 2.64e-06 4.19e-07 5.29e-07 1.59e-06 2.03e-06 8.84e-07 9.95e-07 4.42e-07 1.04e-06 5.02e-07 2.4e-07 8.35e-06 6.91e-07 2.5e-07 7.99e-07 8.07e-07 1.13e-06 6.82e-07 5.79e-07
ENSG00000187801 ZFP69B -193659 4.26e-06 5.79e-06 6.71e-07 3.08e-06 8.72e-07 8.37e-07 3.71e-06 9.98e-07 5.13e-06 2.11e-06 4.22e-06 2.65e-06 7.07e-06 2.04e-06 1.37e-06 3.81e-06 2e-06 2.76e-06 1.43e-06 9.74e-07 2.06e-06 4.91e-06 3.4e-06 1.76e-06 4.95e-06 1.39e-06 2.57e-06 1.48e-06 4.19e-06 2.94e-06 1.98e-06 4.91e-07 6.65e-07 1.82e-06 2.1e-06 9.5e-07 9.3e-07 3.79e-07 1.33e-06 3.27e-07 3.02e-07 6.63e-06 4.01e-07 1.88e-07 5.95e-07 9.16e-07 7.12e-07 4.59e-07 5.85e-07
ENSG00000259943 AL050341.2 -1519 4.97e-05 4.02e-05 6.97e-06 1.81e-05 7.11e-06 1.85e-05 5.41e-05 6.26e-06 4.29e-05 2.01e-05 5.14e-05 2.29e-05 6.01e-05 1.77e-05 8.34e-06 2.82e-05 2.36e-05 3.22e-05 1e-05 8.59e-06 2.02e-05 4.67e-05 3.89e-05 1.15e-05 5.75e-05 1.12e-05 1.97e-05 1.68e-05 3.91e-05 3.19e-05 2.77e-05 2.33e-06 4.39e-06 8.18e-06 1.45e-05 7.55e-06 3.82e-06 3.76e-06 6.08e-06 3.92e-06 1.82e-06 4.6e-05 4.84e-06 4.28e-07 3.11e-06 5.29e-06 5.2e-06 2.24e-06 1.63e-06
ENSG00000261798 \N 467472 7.3e-07 8.69e-07 1.31e-07 3.96e-07 1.18e-07 1.64e-07 4.93e-07 1.09e-07 4.26e-07 2.26e-07 4.3e-07 3.21e-07 8.37e-07 1.17e-07 2.81e-07 2.89e-07 2.25e-07 3.79e-07 2.88e-07 7.29e-08 1.87e-07 4.31e-07 2.77e-07 1.34e-07 5.53e-07 2.42e-07 2.62e-07 1.97e-07 2.98e-07 2.01e-07 2.43e-07 7.69e-08 5.2e-08 1.21e-07 2.61e-07 6.73e-08 1.06e-07 6.67e-08 4.9e-08 7.65e-08 5e-08 5.96e-07 4.41e-08 1.74e-07 1.69e-07 1.29e-08 8.01e-08 5.73e-08 1.55e-07