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Genes within 1Mb (chr1:40255939:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -986215 sc-eQTL 5.91e-01 -0.105 0.195 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 372428 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -61874 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -435709 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -88911 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 563757 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -2297 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 679149 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 564454 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 94552 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -275634 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 215706 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 158212 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -252802 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -723749 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -606424 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -194163 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -221351 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -2028 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -436127 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000010803 SCMH1 -986215 sc-eQTL 2.47e-01 -0.226 0.194 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 372428 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -435709 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -88911 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 563757 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -2297 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 679149 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 467074 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 94552 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -275634 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 215706 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 158212 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -252802 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -723749 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -606424 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -221351 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -2028 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -436127 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000010803 SCMH1 -986215 sc-eQTL 2.83e-01 -0.26 0.241 0.07 PB L2
ENSG00000043514 TRIT1 372428 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -61874 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -435709 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -88911 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 563757 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -2297 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 679149 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 467074 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 94552 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -275634 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 215706 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 158212 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -252802 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -723749 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -606424 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -221351 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 484591 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -2028 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -436127 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000010803 SCMH1 -986215 sc-eQTL 8.82e-01 0.0265 0.179 0.05 Pro_T L2
ENSG00000043514 TRIT1 372428 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -435709 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -88911 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 563757 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -2297 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 679149 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 467074 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 94552 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -275634 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 215706 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 158212 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -252802 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 300827 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -723749 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -606424 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -194163 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -221351 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 484591 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -2028 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -436127 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -435750 eQTL 0.0476 -0.0412 0.0208 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 564454 eQTL 0.0229 -0.0771 0.0338 0.0 0.0 0.0491
ENSG00000117000 RLF 94552 eQTL 1.11e-14 0.202 0.0257 0.00719 0.00716 0.0491
ENSG00000117013 KCNQ4 -527848 eQTL 1.21e-02 -0.202 0.0806 0.0 0.0 0.0491
ENSG00000131238 PPT1 158212 eQTL 1.39e-27 0.703 0.0626 0.0 0.0 0.0491
ENSG00000164002 EXO5 -252802 eQTL 7.09e-03 -0.132 0.049 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -194168 eQTL 0.0404 -0.127 0.062 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 -2028 eQTL 1.08e-08 -0.257 0.0445 0.0 0.0085 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -2297 8.07e-05 7.84e-05 2.42e-05 4.19e-05 2.54e-05 4.27e-05 0.000114 2.32e-05 9.85e-05 7.21e-05 0.000129 5.65e-05 0.00014 4.21e-05 2.81e-05 7.32e-05 5.43e-05 9.31e-05 2.98e-05 2.55e-05 6.64e-05 0.000108 9.24e-05 3.23e-05 0.000137 3.89e-05 5.8e-05 5.12e-05 9.71e-05 6.45e-05 6.79e-05 9.65e-06 1.5e-05 2.64e-05 3.41e-05 2.01e-05 1.56e-05 1.6e-05 1.86e-05 1.1e-05 9.06e-06 8.23e-05 1.17e-05 2.43e-06 1.17e-05 1.87e-05 1.76e-05 1.3e-05 9.51e-06
ENSG00000117000 RLF 94552 1.09e-05 1.33e-05 2.59e-06 9.13e-06 2.97e-06 6.55e-06 1.28e-05 3.51e-06 1.59e-05 8.22e-06 1.85e-05 7.38e-06 2.28e-05 5.36e-06 4.55e-06 9.71e-06 6.86e-06 1.11e-05 4.12e-06 4.08e-06 8.17e-06 1.35e-05 1.16e-05 3.69e-06 2.45e-05 5.29e-06 8e-06 7.77e-06 1.41e-05 7.98e-06 1.03e-05 1.65e-06 1.52e-06 4.26e-06 7.58e-06 3.11e-06 2.31e-06 2.72e-06 2.78e-06 2.37e-06 1.74e-06 1.71e-05 2.47e-06 4.6e-07 1.67e-06 2.87e-06 3.43e-06 1.5e-06 1.04e-06
ENSG00000117016 \N -409743 1.24e-06 9e-07 2.89e-07 5.88e-07 2.66e-07 4.69e-07 6.87e-07 3.02e-07 1.14e-06 3.82e-07 1.15e-06 5.6e-07 1.46e-06 2.61e-07 4.33e-07 6.57e-07 7.79e-07 5.2e-07 5.54e-07 6.87e-07 6.12e-07 9.14e-07 6.18e-07 3.93e-07 1.53e-06 3.02e-07 6.16e-07 7.22e-07 6.91e-07 8.36e-07 4.9e-07 2.73e-07 2.08e-07 5.39e-07 4.91e-07 4.15e-07 7.46e-07 3.44e-07 3.25e-07 2.88e-07 3.4e-07 1.12e-06 1.14e-07 1.32e-07 1.73e-07 1.71e-07 2.29e-07 1.71e-07 1.9e-07
ENSG00000131238 PPT1 158212 4.89e-06 6.47e-06 9.73e-07 4.03e-06 2.04e-06 2.67e-06 5.67e-06 1.49e-06 5.48e-06 4.35e-06 8.17e-06 3.62e-06 9.94e-06 2.9e-06 1.55e-06 5.69e-06 3e-06 3.74e-06 2.19e-06 2.26e-06 4.56e-06 7.44e-06 4.79e-06 1.99e-06 8.86e-06 2.42e-06 3.95e-06 3.19e-06 5.21e-06 4.12e-06 3.57e-06 9.95e-07 8.97e-07 2.77e-06 3.3e-06 1.63e-06 1.73e-06 1.84e-06 1.26e-06 9.79e-07 1.08e-06 8.15e-06 1.29e-06 2.91e-07 7.62e-07 1.72e-06 1.74e-06 6.9e-07 4.15e-07
ENSG00000187801 ZFP69B -194168 4.04e-06 4.81e-06 7.32e-07 3.18e-06 1.63e-06 1.66e-06 2.48e-06 9.99e-07 5.09e-06 2.88e-06 4.89e-06 3.54e-06 7.77e-06 2.33e-06 1.31e-06 3.81e-06 2.06e-06 2.81e-06 1.5e-06 1.15e-06 2.8e-06 4.85e-06 3.47e-06 1.63e-06 5.26e-06 1.97e-06 2.43e-06 1.84e-06 4.15e-06 2.61e-06 2.71e-06 9.71e-07 7.03e-07 1.52e-06 2.05e-06 9.89e-07 1.27e-06 1.29e-06 8.6e-07 7.21e-07 9.87e-07 5.27e-06 6.81e-07 1.97e-07 7.72e-07 8.09e-07 9.67e-07 7.14e-07 6.2e-07
ENSG00000259943 AL050341.2 -2028 8.63e-05 8.31e-05 2.74e-05 4.57e-05 2.84e-05 4.54e-05 0.000121 2.62e-05 0.000107 7.78e-05 0.00014 6.13e-05 0.000149 4.58e-05 3.03e-05 7.95e-05 5.72e-05 9.86e-05 3.16e-05 2.93e-05 7.36e-05 0.000116 0.0001 3.62e-05 0.000147 4.39e-05 6.31e-05 5.58e-05 0.000105 6.86e-05 7.42e-05 1.11e-05 1.87e-05 3.09e-05 3.8e-05 2.26e-05 1.8e-05 1.8e-05 1.98e-05 1.2e-05 1.04e-05 8.72e-05 1.21e-05 2.61e-06 1.29e-05 2.11e-05 1.92e-05 1.52e-05 1.03e-05
ENSG00000261798 \N 466963 8.35e-07 6.76e-07 1.45e-07 3.25e-07 1.19e-07 3.32e-07 5.49e-07 2.03e-07 6.71e-07 3.05e-07 9.39e-07 5.22e-07 1.02e-06 1.98e-07 3.35e-07 3.79e-07 4.73e-07 4.16e-07 3.48e-07 3.99e-07 3.24e-07 5.37e-07 4.08e-07 2.24e-07 9.26e-07 2.44e-07 4.37e-07 4.7e-07 4.13e-07 5.36e-07 3.81e-07 3.05e-07 1.78e-07 2.74e-07 3.29e-07 2.76e-07 5.04e-07 2.47e-07 1.44e-07 1.04e-07 2.72e-07 6.81e-07 5.58e-08 6.51e-08 1.93e-07 1.02e-07 1.6e-07 4.79e-08 1.11e-07