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Genes within 1Mb (chr1:40252114:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -990040 sc-eQTL 5.91e-01 -0.105 0.195 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 368603 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -65699 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -439534 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -92736 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 559932 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -6122 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 675324 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 560629 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 90727 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -279459 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 211881 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 154387 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -256627 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -727574 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -610249 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -197988 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -225176 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -5853 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -439952 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000010803 SCMH1 -990040 sc-eQTL 2.47e-01 -0.226 0.194 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 368603 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -439534 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -92736 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 559932 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -6122 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 675324 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 463249 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 90727 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -279459 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 211881 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 154387 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -256627 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -727574 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -610249 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -225176 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -5853 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -439952 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000010803 SCMH1 -990040 sc-eQTL 2.83e-01 -0.26 0.241 0.07 PB L2
ENSG00000043514 TRIT1 368603 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -65699 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -439534 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -92736 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 559932 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -6122 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 675324 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 463249 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 90727 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -279459 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 211881 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 154387 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -256627 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -727574 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -610249 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -225176 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 480766 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -5853 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -439952 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000010803 SCMH1 -990040 sc-eQTL 8.82e-01 0.0265 0.179 0.05 Pro_T L2
ENSG00000043514 TRIT1 368603 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -439534 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -92736 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 559932 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -6122 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 675324 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 463249 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 90727 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -279459 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 211881 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 154387 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -256627 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 297002 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -727574 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -610249 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -197988 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -225176 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 480766 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -5853 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -439952 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -439575 eQTL 0.0475 -0.0412 0.0208 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 560629 eQTL 0.0229 -0.077 0.0338 0.0 0.0 0.0491
ENSG00000117000 RLF 90727 eQTL 1.11e-14 0.202 0.0257 0.00718 0.00715 0.0491
ENSG00000117013 KCNQ4 -531673 eQTL 1.21e-02 -0.202 0.0806 0.0 0.0 0.0491
ENSG00000131238 PPT1 154387 eQTL 1.38e-27 0.703 0.0626 0.0 0.0 0.0491
ENSG00000164002 EXO5 -256627 eQTL 7.09e-03 -0.132 0.049 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -197993 eQTL 0.0404 -0.127 0.062 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 -5853 eQTL 1.09e-08 -0.257 0.0445 0.0 0.00878 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -6122 4.04e-05 3.54e-05 7.01e-06 1.67e-05 7e-06 1.7e-05 4.92e-05 5.69e-06 3.69e-05 1.74e-05 4.41e-05 2.12e-05 5.48e-05 1.6e-05 8.05e-06 2.35e-05 2.12e-05 2.99e-05 9.51e-06 8.3e-06 1.94e-05 3.96e-05 3.55e-05 1.09e-05 5.06e-05 1.02e-05 1.73e-05 1.52e-05 3.61e-05 3.19e-05 2.38e-05 2.13e-06 3.67e-06 8.17e-06 1.34e-05 7.56e-06 3.82e-06 3.75e-06 6.15e-06 3.94e-06 1.85e-06 4.16e-05 4.52e-06 4.11e-07 2.92e-06 4.96e-06 4.62e-06 2.18e-06 1.5e-06
ENSG00000117000 RLF 90727 8.39e-06 9.37e-06 1.33e-06 5.06e-06 2.44e-06 3.82e-06 9.78e-06 2.12e-06 9.16e-06 5.14e-06 1.19e-05 5.33e-06 1.36e-05 4e-06 2.24e-06 6.44e-06 4.16e-06 7.08e-06 2.65e-06 2.91e-06 5.12e-06 9.11e-06 7.14e-06 3.36e-06 1.32e-05 4.03e-06 5.26e-06 3.69e-06 8.87e-06 7.96e-06 4.97e-06 1.07e-06 1.24e-06 3.33e-06 4.59e-06 2.63e-06 1.84e-06 1.97e-06 2.16e-06 1.02e-06 1.05e-06 1.17e-05 1.49e-06 2.62e-07 7.99e-07 1.8e-06 1.47e-06 8.09e-07 4.86e-07
ENSG00000117016 \N -413568 1.27e-06 9.88e-07 3.26e-07 6.97e-07 3.51e-07 4.77e-07 1.26e-06 3.69e-07 1.42e-06 4.32e-07 1.63e-06 6.63e-07 1.98e-06 2.76e-07 5.65e-07 8.62e-07 8.19e-07 6.5e-07 6.18e-07 6.8e-07 6.13e-07 1.42e-06 9.28e-07 6.51e-07 2.06e-06 4.83e-07 9.34e-07 7.27e-07 1.25e-06 1.11e-06 6.02e-07 2.06e-07 2.13e-07 6.95e-07 5.8e-07 4.44e-07 5.17e-07 1.67e-07 3.35e-07 2.48e-07 2.59e-07 1.53e-06 1.24e-07 8.08e-08 1.55e-07 1.28e-07 2.42e-07 3.77e-08 1.34e-07
ENSG00000131238 PPT1 154387 4.89e-06 5.22e-06 6.65e-07 3.29e-06 1.65e-06 1.66e-06 5.15e-06 1.18e-06 4.9e-06 2.91e-06 6.53e-06 3.37e-06 7.67e-06 1.97e-06 1.23e-06 4e-06 1.98e-06 3.98e-06 1.49e-06 1.37e-06 2.67e-06 5.36e-06 4.44e-06 1.71e-06 7.71e-06 2.06e-06 2.86e-06 1.55e-06 4.41e-06 4.36e-06 2.83e-06 4.9e-07 7.39e-07 2.15e-06 1.96e-06 1.3e-06 1.05e-06 4.71e-07 8.97e-07 5.49e-07 8.22e-07 6.29e-06 6.59e-07 1.67e-07 7.75e-07 1.13e-06 1.15e-06 7.1e-07 5.73e-07
ENSG00000187801 ZFP69B -197993 4.17e-06 4.48e-06 7.87e-07 2.14e-06 1.33e-06 1.03e-06 2.52e-06 9.6e-07 4.09e-06 1.97e-06 4.16e-06 3.39e-06 6.6e-06 1.49e-06 1.22e-06 2.82e-06 2.06e-06 2.75e-06 1.39e-06 9.52e-07 2.65e-06 4.35e-06 3.54e-06 1.71e-06 4.81e-06 1.52e-06 2.66e-06 1.51e-06 3.92e-06 3e-06 2.01e-06 5.25e-07 7.92e-07 1.88e-06 2.04e-06 9.58e-07 9.05e-07 4.75e-07 1.1e-06 3.41e-07 5.18e-07 4.56e-06 3.83e-07 1.61e-07 4.7e-07 3.94e-07 8.4e-07 5.21e-07 3.26e-07
ENSG00000259943 AL050341.2 -5853 4.1e-05 3.54e-05 7.04e-06 1.67e-05 7e-06 1.72e-05 4.97e-05 5.78e-06 3.69e-05 1.76e-05 4.41e-05 2.11e-05 5.54e-05 1.6e-05 8.1e-06 2.37e-05 2.12e-05 3e-05 9.6e-06 8.35e-06 1.94e-05 3.96e-05 3.58e-05 1.12e-05 5.06e-05 1.04e-05 1.74e-05 1.53e-05 3.61e-05 3.24e-05 2.41e-05 2.21e-06 3.74e-06 8.17e-06 1.33e-05 7.56e-06 3.81e-06 3.75e-06 6.2e-06 3.94e-06 1.85e-06 4.2e-05 4.5e-06 4.21e-07 2.95e-06 4.96e-06 4.68e-06 2.18e-06 1.5e-06
ENSG00000261798 \N 463138 1.26e-06 9.01e-07 2.81e-07 3.65e-07 2.46e-07 4.11e-07 9.74e-07 3.46e-07 1.14e-06 3.85e-07 1.35e-06 6.06e-07 1.57e-06 2.54e-07 4.41e-07 7e-07 7.77e-07 5.54e-07 3.66e-07 4.36e-07 3.91e-07 1.04e-06 7.16e-07 4.87e-07 1.86e-06 3.63e-07 6.7e-07 5.44e-07 8.56e-07 9.3e-07 5.37e-07 7.37e-08 1.79e-07 4.83e-07 4.22e-07 4.18e-07 3.65e-07 1.5e-07 1.44e-07 4.23e-08 2.32e-07 1.22e-06 5.81e-08 4.13e-08 1.64e-07 7.64e-08 1.9e-07 8.87e-08 9.5e-08