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Genes within 1Mb (chr1:40248784:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -993370 sc-eQTL 5.91e-01 -0.105 0.195 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 365273 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -69029 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -442864 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -96066 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 556602 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -9452 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 671994 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 557299 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 87397 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -282789 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 208551 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 151057 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -259957 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -730904 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -613579 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -201318 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -228506 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -9183 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -443282 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000010803 SCMH1 -993370 sc-eQTL 2.47e-01 -0.226 0.194 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 365273 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -442864 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -96066 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 556602 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -9452 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 671994 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 459919 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 87397 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -282789 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 208551 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 151057 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -259957 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -730904 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -613579 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -228506 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -9183 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -443282 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000010803 SCMH1 -993370 sc-eQTL 2.83e-01 -0.26 0.241 0.07 PB L2
ENSG00000043514 TRIT1 365273 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -69029 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -442864 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -96066 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 556602 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -9452 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 671994 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 459919 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 87397 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -282789 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 208551 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 151057 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -259957 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -730904 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -613579 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -228506 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 477436 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -9183 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -443282 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000010803 SCMH1 -993370 sc-eQTL 8.82e-01 0.0265 0.179 0.05 Pro_T L2
ENSG00000043514 TRIT1 365273 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -442864 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -96066 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 556602 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -9452 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 671994 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 459919 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 87397 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -282789 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 208551 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 151057 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -259957 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 293672 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -730904 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -613579 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -201318 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -228506 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 477436 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -9183 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -443282 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -442905 eQTL 0.0468 -0.0413 0.0208 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 557299 eQTL 0.0225 -0.0771 0.0338 0.0 0.0 0.0491
ENSG00000117000 RLF 87397 eQTL 1.23e-14 0.201 0.0257 0.00642 0.00645 0.0491
ENSG00000117013 KCNQ4 -535003 eQTL 1.17e-02 -0.203 0.0805 0.0 0.0 0.0491
ENSG00000131238 PPT1 151057 eQTL 1.24e-27 0.703 0.0625 0.0 0.0 0.0491
ENSG00000164002 EXO5 -259957 eQTL 7.54e-03 -0.131 0.0489 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -201323 eQTL 0.0416 -0.126 0.0619 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 -9183 eQTL 1.22e-08 -0.256 0.0445 0.0 0.00674 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -9452 5.17e-05 4.36e-05 1.07e-05 2.31e-05 1.03e-05 2.44e-05 6.71e-05 9.88e-06 5.75e-05 3.05e-05 7.48e-05 3.25e-05 8.11e-05 2.53e-05 1.26e-05 3.78e-05 3.34e-05 4.53e-05 1.33e-05 1.33e-05 2.88e-05 5.95e-05 5.12e-05 1.47e-05 7.53e-05 1.77e-05 2.53e-05 2.56e-05 5.14e-05 3.83e-05 4.14e-05 4.08e-06 7.03e-06 1.18e-05 1.96e-05 1e-05 5.94e-06 6.26e-06 9.17e-06 5.03e-06 2.54e-06 4.97e-05 5.45e-06 7.37e-07 5.5e-06 8.17e-06 9.01e-06 4.21e-06 3.25e-06
ENSG00000117000 RLF 87397 1.2e-05 1.92e-05 2.73e-06 1.2e-05 2.98e-06 7.28e-06 2.17e-05 3.59e-06 1.73e-05 8.28e-06 2.15e-05 8.43e-06 2.97e-05 7.53e-06 4.83e-06 9.44e-06 8.8e-06 1.21e-05 4.12e-06 4.78e-06 7.92e-06 1.68e-05 1.59e-05 4.98e-06 2.63e-05 4.94e-06 8.02e-06 7.35e-06 1.67e-05 1.54e-05 1.16e-05 1.23e-06 1.49e-06 4.2e-06 8.54e-06 3.8e-06 1.97e-06 2.77e-06 2.99e-06 2.42e-06 1.62e-06 1.92e-05 2.47e-06 3.59e-07 1.44e-06 2.58e-06 2.95e-06 1.3e-06 1.12e-06
ENSG00000117016 \N -416898 8.48e-07 9.37e-07 8.9e-08 1e-06 9.23e-08 3.54e-07 7.44e-07 2.98e-07 7.08e-07 2.57e-07 1.19e-06 5.22e-07 1.37e-06 1.57e-07 3.61e-07 2.69e-07 5.92e-07 3.82e-07 3.71e-07 4.32e-07 2.42e-07 5.66e-07 4.77e-07 2.95e-07 1.39e-06 2.34e-07 4.34e-07 3.24e-07 5.16e-07 1.11e-06 3.68e-07 7.59e-08 2.17e-07 2.84e-07 5.61e-07 3e-07 6.17e-07 2.47e-07 1.34e-07 7.66e-08 1.95e-07 6.49e-07 1.67e-07 1.49e-07 1.27e-07 7.57e-08 1.11e-07 8.15e-08 5.86e-08
ENSG00000131238 PPT1 151057 5.07e-06 9.44e-06 5.92e-07 4.82e-06 1.9e-06 3.7e-06 9.45e-06 1.92e-06 6.51e-06 3.77e-06 9.68e-06 4.77e-06 1.13e-05 3.81e-06 1.4e-06 4.67e-06 3.79e-06 3.84e-06 2.26e-06 2.69e-06 3.52e-06 7.55e-06 5.54e-06 1.93e-06 9.38e-06 2.14e-06 4.22e-06 2.2e-06 6.75e-06 7.77e-06 3.64e-06 4.97e-07 9.77e-07 2.62e-06 4.3e-06 1.7e-06 1.74e-06 1.93e-06 1.34e-06 1e-06 8.54e-07 8.42e-06 1.39e-06 3.33e-07 7.41e-07 1.17e-06 8.75e-07 7.8e-07 4.78e-07
ENSG00000187801 ZFP69B -201323 3.53e-06 4.88e-06 4.9e-07 3.05e-06 1.2e-06 1.72e-06 3.59e-06 1.1e-06 4.76e-06 1.68e-06 4.89e-06 3.31e-06 7.24e-06 2.17e-06 1.2e-06 2.28e-06 2.06e-06 2.15e-06 1.41e-06 1.2e-06 2.65e-06 4.48e-06 3.39e-06 1.8e-06 4.83e-06 1.19e-06 2.45e-06 1.41e-06 3.8e-06 4.3e-06 1.94e-06 4.17e-07 5.42e-07 1.75e-06 1.99e-06 8.35e-07 1.03e-06 1.29e-06 9.31e-07 5.33e-07 4.03e-07 4.1e-06 8.15e-07 3.18e-07 3.64e-07 6.75e-07 7.92e-07 6.96e-07 3.26e-07
ENSG00000259943 AL050341.2 -9183 5.17e-05 4.36e-05 1.09e-05 2.34e-05 1.04e-05 2.46e-05 6.74e-05 9.91e-06 5.82e-05 3.09e-05 7.48e-05 3.28e-05 8.19e-05 2.53e-05 1.25e-05 3.81e-05 3.38e-05 4.58e-05 1.34e-05 1.37e-05 2.9e-05 6.04e-05 5.2e-05 1.48e-05 7.63e-05 1.81e-05 2.56e-05 2.61e-05 5.24e-05 3.83e-05 4.14e-05 4.13e-06 7.03e-06 1.21e-05 1.96e-05 1.01e-05 6.05e-06 6.43e-06 9.26e-06 5.08e-06 2.53e-06 5.02e-05 5.53e-06 7.45e-07 5.6e-06 8.34e-06 9.21e-06 4.34e-06 3.37e-06
ENSG00000261798 \N 459808 7.23e-07 7.56e-07 7.45e-08 5.65e-07 1.05e-07 3.15e-07 6.19e-07 2.07e-07 4.43e-07 2.01e-07 1.03e-06 3.84e-07 9.97e-07 1.17e-07 2.57e-07 1.84e-07 3.69e-07 3.04e-07 3.01e-07 2.65e-07 2.01e-07 4.38e-07 3.84e-07 1.8e-07 9.15e-07 2.07e-07 2.56e-07 2.57e-07 3.58e-07 9.25e-07 2.6e-07 5.46e-08 1.18e-07 1.88e-07 4.15e-07 1.55e-07 4.61e-07 1.69e-07 8.61e-08 1.79e-08 1.02e-07 4.35e-07 5.04e-08 1.63e-07 8.24e-08 4.33e-08 1.1e-07 7.69e-08 5.71e-08