logo

Genes within 1Mb (chr1:40248362:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -993792 sc-eQTL 5.91e-01 -0.105 0.195 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 364851 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -69451 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -443286 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -96488 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 556180 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -9874 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 671572 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 556877 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 86975 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -283211 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 208129 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 150635 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -260379 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -731326 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -614001 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -201740 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -228928 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -9605 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -443704 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000010803 SCMH1 -993792 sc-eQTL 2.47e-01 -0.226 0.194 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 364851 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -443286 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -96488 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 556180 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -9874 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 671572 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 459497 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 86975 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -283211 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 208129 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 150635 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -260379 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -731326 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -614001 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -228928 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -9605 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -443704 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000010803 SCMH1 -993792 sc-eQTL 2.83e-01 -0.26 0.241 0.07 PB L2
ENSG00000043514 TRIT1 364851 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -69451 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -443286 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -96488 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 556180 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -9874 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 671572 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 459497 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 86975 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -283211 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 208129 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 150635 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -260379 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -731326 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -614001 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -228928 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 477014 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -9605 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -443704 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000010803 SCMH1 -993792 sc-eQTL 8.82e-01 0.0265 0.179 0.05 Pro_T L2
ENSG00000043514 TRIT1 364851 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -443286 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -96488 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 556180 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -9874 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 671572 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 459497 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 86975 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -283211 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 208129 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 150635 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -260379 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 293250 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -731326 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -614001 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -201740 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -228928 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 477014 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -9605 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -443704 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -443327 eQTL 0.0468 -0.0413 0.0208 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 556877 eQTL 0.0225 -0.0771 0.0338 0.0 0.0 0.0491
ENSG00000117000 RLF 86975 eQTL 1.23e-14 0.201 0.0257 0.00642 0.00645 0.0491
ENSG00000117013 KCNQ4 -535425 eQTL 1.17e-02 -0.203 0.0805 0.0 0.0 0.0491
ENSG00000131238 PPT1 150635 eQTL 1.24e-27 0.703 0.0625 0.0 0.0 0.0491
ENSG00000164002 EXO5 -260379 eQTL 7.54e-03 -0.131 0.0489 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -201745 eQTL 0.0416 -0.126 0.0619 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 -9605 eQTL 1.22e-08 -0.256 0.0445 0.0 0.00666 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -9874 3.04e-05 3.14e-05 6.4e-06 1.58e-05 6.08e-06 1.5e-05 4.55e-05 4.74e-06 3.16e-05 1.58e-05 3.9e-05 1.77e-05 5.15e-05 1.45e-05 7.32e-06 1.92e-05 1.83e-05 2.48e-05 8.86e-06 7.31e-06 1.56e-05 3.3e-05 3.15e-05 9.9e-06 4.66e-05 8.09e-06 1.47e-05 1.31e-05 3.49e-05 3.01e-05 2.03e-05 1.62e-06 3.24e-06 7.83e-06 1.23e-05 6.44e-06 3.65e-06 3.35e-06 5.44e-06 3.69e-06 1.79e-06 3.66e-05 3.44e-06 4.23e-07 2.7e-06 4.51e-06 4.04e-06 1.77e-06 1.53e-06
ENSG00000117000 RLF 86975 6.69e-06 9.21e-06 9.83e-07 4.37e-06 1.93e-06 3.41e-06 9.48e-06 1.5e-06 6.61e-06 4.05e-06 1.01e-05 4.64e-06 1.21e-05 4.05e-06 1.69e-06 4.99e-06 3.91e-06 3.89e-06 2.55e-06 2.51e-06 3.43e-06 7.66e-06 6.57e-06 2.42e-06 1.22e-05 2.66e-06 3.64e-06 2.62e-06 7.52e-06 7.71e-06 4.46e-06 5.57e-07 8.85e-07 2.78e-06 3.53e-06 2.03e-06 1.55e-06 1.74e-06 1.57e-06 9.09e-07 8.6e-07 9.24e-06 1.04e-06 1.73e-07 7.12e-07 1.21e-06 9.71e-07 6.66e-07 5.44e-07
ENSG00000117016 \N -417320 1.24e-06 9e-07 1.76e-07 3.54e-07 1.11e-07 3.12e-07 7.54e-07 2.25e-07 8.32e-07 3.16e-07 1.1e-06 5.53e-07 1.49e-06 2.4e-07 3.61e-07 3.57e-07 7.78e-07 4.44e-07 3.64e-07 4.19e-07 2.41e-07 5.83e-07 5.67e-07 2.92e-07 1.57e-06 2.34e-07 4.55e-07 4.59e-07 6.84e-07 9.25e-07 4.59e-07 3.86e-08 1.36e-07 2.87e-07 3.21e-07 2.13e-07 4.21e-07 1.5e-07 1.5e-07 3.01e-08 2.86e-07 9.5e-07 6.28e-08 4.13e-08 1.81e-07 6.01e-08 1.43e-07 8.82e-08 6.17e-08
ENSG00000131238 PPT1 150635 4.19e-06 4.99e-06 7.57e-07 2.65e-06 1.12e-06 1.35e-06 4.13e-06 9.52e-07 4.64e-06 1.92e-06 4.69e-06 3.46e-06 7.07e-06 2.33e-06 1.44e-06 2.42e-06 1.87e-06 2.83e-06 1.39e-06 9.49e-07 1.98e-06 4.23e-06 3.6e-06 1.71e-06 5.89e-06 1.38e-06 2.1e-06 1.77e-06 4.32e-06 4.15e-06 2.72e-06 5.93e-07 7.51e-07 1.88e-06 2.24e-06 8.71e-07 9.46e-07 4.07e-07 9.49e-07 3.61e-07 4.52e-07 5.32e-06 4.18e-07 1.55e-07 3.45e-07 5.86e-07 6.79e-07 2.87e-07 1.57e-07
ENSG00000187801 ZFP69B -201745 2.66e-06 3.14e-06 3.33e-07 1.99e-06 4.89e-07 8.08e-07 2.29e-06 6.3e-07 2.13e-06 8.92e-07 2.55e-06 1.45e-06 4.2e-06 1.41e-06 9.53e-07 1.53e-06 1.54e-06 2.23e-06 1.37e-06 1.43e-06 1.04e-06 3.05e-06 2.59e-06 1.05e-06 4.08e-06 1.27e-06 1.3e-06 1.79e-06 2.49e-06 2.37e-06 2.01e-06 3.1e-07 5.7e-07 1.25e-06 1.63e-06 8.85e-07 8.57e-07 3.93e-07 1.33e-06 3.8e-07 2.1e-07 3.43e-06 5.88e-07 1.8e-07 3.52e-07 3.33e-07 6.24e-07 2.32e-07 2.82e-07
ENSG00000259943 AL050341.2 -9605 3.08e-05 3.18e-05 6.39e-06 1.59e-05 6.17e-06 1.51e-05 4.59e-05 4.84e-06 3.18e-05 1.6e-05 3.9e-05 1.78e-05 5.21e-05 1.45e-05 7.4e-06 1.94e-05 1.84e-05 2.52e-05 9e-06 7.38e-06 1.59e-05 3.34e-05 3.15e-05 1e-05 4.72e-05 8.09e-06 1.47e-05 1.33e-05 3.51e-05 3.04e-05 2.03e-05 1.61e-06 3.22e-06 7.79e-06 1.24e-05 6.56e-06 3.69e-06 3.34e-06 5.44e-06 3.75e-06 1.81e-06 3.71e-05 3.46e-06 4.23e-07 2.71e-06 4.53e-06 4.14e-06 1.8e-06 1.53e-06
ENSG00000261798 \N 459386 9.36e-07 7.58e-07 1.22e-07 4.37e-07 1.12e-07 3.15e-07 6.09e-07 1.59e-07 5.88e-07 2.62e-07 9.39e-07 4.62e-07 1.05e-06 1.97e-07 2.86e-07 2.55e-07 5.64e-07 4.11e-07 2.79e-07 2.78e-07 2.52e-07 4.79e-07 4.06e-07 1.76e-07 1.25e-06 2.56e-07 3.1e-07 3.24e-07 4.9e-07 7.92e-07 4.26e-07 4.4e-08 8.37e-08 1.93e-07 3.32e-07 1.48e-07 2.96e-07 1.15e-07 1.13e-07 8.8e-09 1.85e-07 7.04e-07 6.04e-08 1.95e-08 1.34e-07 3.92e-08 1.32e-07 5.86e-08 5.13e-08