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Genes within 1Mb (chr1:40247307:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -994847 sc-eQTL 5.91e-01 -0.105 0.195 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 363796 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -70506 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -444341 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -97543 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 555125 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -10929 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 670517 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 555822 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 85920 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -284266 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 207074 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 149580 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -261434 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -732381 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -615056 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -202795 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -229983 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -10660 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -444759 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000010803 SCMH1 -994847 sc-eQTL 2.47e-01 -0.226 0.194 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 363796 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -444341 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -97543 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 555125 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -10929 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 670517 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 458442 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 85920 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -284266 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 207074 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 149580 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -261434 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -732381 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -615056 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -229983 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -10660 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -444759 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000010803 SCMH1 -994847 sc-eQTL 2.83e-01 -0.26 0.241 0.07 PB L2
ENSG00000043514 TRIT1 363796 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -70506 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -444341 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -97543 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 555125 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -10929 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 670517 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 458442 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 85920 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -284266 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 207074 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 149580 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -261434 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -732381 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -615056 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -229983 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 475959 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -10660 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -444759 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000010803 SCMH1 -994847 sc-eQTL 8.82e-01 0.0265 0.179 0.05 Pro_T L2
ENSG00000043514 TRIT1 363796 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -444341 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -97543 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 555125 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -10929 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 670517 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 458442 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 85920 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -284266 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 207074 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 149580 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -261434 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 292195 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -732381 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -615056 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -202795 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -229983 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 475959 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -10660 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -444759 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -444382 eQTL 0.0468 -0.0413 0.0208 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 555822 eQTL 0.0225 -0.0771 0.0338 0.0 0.0 0.0491
ENSG00000117000 RLF 85920 eQTL 1.23e-14 0.201 0.0257 0.00642 0.00645 0.0491
ENSG00000117013 KCNQ4 -536480 eQTL 1.17e-02 -0.203 0.0805 0.0 0.0 0.0491
ENSG00000131238 PPT1 149580 eQTL 1.24e-27 0.703 0.0625 0.0 0.0 0.0491
ENSG00000164002 EXO5 -261434 eQTL 7.54e-03 -0.131 0.0489 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -202800 eQTL 0.0416 -0.126 0.0619 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 -10660 eQTL 1.22e-08 -0.256 0.0445 0.0 0.00632 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -10929 3.59e-05 3.14e-05 7.04e-06 1.69e-05 6.91e-06 1.72e-05 4.92e-05 5.69e-06 3.31e-05 1.55e-05 3.92e-05 1.94e-05 5.36e-05 1.49e-05 7.89e-06 2.17e-05 2.01e-05 3e-05 1.07e-05 1.03e-05 1.94e-05 3.59e-05 3.33e-05 1.44e-05 5.03e-05 9.39e-06 1.6e-05 1.34e-05 3.49e-05 5.11e-05 2.22e-05 3.21e-06 5.05e-06 9.8e-06 1.43e-05 9e-06 4.87e-06 4.91e-06 7.1e-06 4.35e-06 1.99e-06 4.15e-05 4.51e-06 6.44e-07 3.35e-06 5.15e-06 4.53e-06 2.29e-06 1.78e-06
ENSG00000117000 RLF 85920 6.93e-06 7.87e-06 8.81e-07 4.02e-06 1.76e-06 2.71e-06 8.96e-06 1.29e-06 4.75e-06 3.41e-06 8.87e-06 3.67e-06 1.12e-05 3.22e-06 1.18e-06 5.33e-06 3.71e-06 3.94e-06 1.99e-06 1.92e-06 3.51e-06 7.48e-06 5.53e-06 2.42e-06 1.07e-05 2.31e-06 3.39e-06 1.86e-06 6.45e-06 7.78e-06 3.68e-06 5.85e-07 7.82e-07 2.78e-06 3.09e-06 2.1e-06 1.4e-06 6.96e-07 1.38e-06 7.35e-07 8.36e-07 1.01e-05 9.1e-07 1.58e-07 7.94e-07 9.77e-07 9.71e-07 6.09e-07 5.83e-07
ENSG00000117016 \N -418375 1.01e-06 4.63e-07 8.83e-08 3.48e-07 1.05e-07 1.71e-07 4.93e-07 8.11e-08 2.75e-07 1.65e-07 4.39e-07 2.55e-07 7.02e-07 1.07e-07 1.24e-07 1.96e-07 1.85e-07 3.44e-07 1.27e-07 7.26e-08 1.61e-07 3.1e-07 3.02e-07 1.03e-07 7.72e-07 2.07e-07 1.87e-07 1.85e-07 2.78e-07 4.61e-07 2.11e-07 4.29e-08 4.87e-08 1.27e-07 2.82e-07 5.7e-08 6.95e-08 6.11e-08 4.78e-08 7.65e-08 2.78e-08 6.49e-07 3.19e-08 1.08e-08 5.49e-08 8.94e-09 9.38e-08 0.0 4.83e-08
ENSG00000131238 PPT1 149580 4.32e-06 3.63e-06 5.11e-07 1.88e-06 6.3e-07 8.42e-07 2.55e-06 8.06e-07 2.27e-06 1.22e-06 3.13e-06 1.77e-06 5.54e-06 1.2e-06 8.93e-07 2.07e-06 1.56e-06 2.11e-06 1.49e-06 1.52e-06 1.64e-06 3.54e-06 3.3e-06 1.68e-06 4.69e-06 1.06e-06 1.49e-06 1.78e-06 3.12e-06 3.41e-06 1.91e-06 3.27e-07 5.43e-07 1.31e-06 1.76e-06 9.5e-07 9.08e-07 4.75e-07 1.22e-06 3.96e-07 1.51e-07 4.86e-06 5.74e-07 1.99e-07 2.74e-07 3.28e-07 8.61e-07 1.99e-07 2.12e-07
ENSG00000187801 ZFP69B -202800 2.18e-06 2.05e-06 2.2e-07 1.37e-06 3.86e-07 6.74e-07 1.29e-06 4.27e-07 1.7e-06 7.2e-07 1.86e-06 1.32e-06 2.98e-06 6.19e-07 3.96e-07 1.06e-06 1.12e-06 1.32e-06 5.86e-07 4.81e-07 6.18e-07 1.93e-06 1.64e-06 7.64e-07 2.59e-06 7.8e-07 1.05e-06 8.7e-07 1.72e-06 1.63e-06 7.66e-07 3.03e-07 2.88e-07 5.66e-07 9.03e-07 6.39e-07 7.05e-07 3.23e-07 4.8e-07 3.15e-07 2.58e-07 3.35e-06 3.52e-07 8.08e-08 2.87e-07 2.33e-07 2.71e-07 1.39e-07 1.56e-07
ENSG00000259943 AL050341.2 -10660 3.63e-05 3.18e-05 7.06e-06 1.7e-05 6.98e-06 1.74e-05 4.97e-05 5.78e-06 3.36e-05 1.56e-05 3.97e-05 1.95e-05 5.42e-05 1.5e-05 7.94e-06 2.2e-05 2.01e-05 3.03e-05 1.07e-05 1.04e-05 1.95e-05 3.64e-05 3.36e-05 1.45e-05 5.06e-05 9.53e-06 1.61e-05 1.36e-05 3.51e-05 5.18e-05 2.25e-05 3.3e-06 5.05e-06 1e-05 1.45e-05 8.99e-06 4.8e-06 4.99e-06 7.05e-06 4.37e-06 2.02e-06 4.16e-05 4.52e-06 6.52e-07 3.41e-06 5.29e-06 4.55e-06 2.27e-06 1.79e-06
ENSG00000261798 \N 458331 8.21e-07 2.88e-07 7.45e-08 2.58e-07 1.1e-07 1.32e-07 3.7e-07 6.75e-08 2.12e-07 1.28e-07 2.98e-07 1.91e-07 5.09e-07 8.85e-08 7.98e-08 1.39e-07 9.3e-08 2.9e-07 8e-08 6.73e-08 1.35e-07 2.3e-07 2.26e-07 4.81e-08 5.15e-07 1.76e-07 1.48e-07 1.52e-07 1.98e-07 2.89e-07 1.76e-07 4.4e-08 4.23e-08 9.61e-08 1.67e-07 4.95e-08 5.96e-08 7.63e-08 5.69e-08 5.96e-08 5.39e-08 4.55e-07 3.53e-08 1.1e-08 3.61e-08 9.86e-09 7.66e-08 2.2e-09 4.91e-08