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Genes within 1Mb (chr1:40246355:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -995799 sc-eQTL 5.91e-01 -0.105 0.195 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 362844 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -71458 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -445293 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -98495 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 554173 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -11881 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 669565 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 554870 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 84968 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -285218 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 206122 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 148628 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -262386 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -733333 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -616008 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -203747 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -230935 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -11612 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -445711 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000010803 SCMH1 -995799 sc-eQTL 2.47e-01 -0.226 0.194 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 362844 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -445293 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -98495 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 554173 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -11881 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 669565 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 457490 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 84968 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -285218 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 206122 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 148628 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -262386 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -733333 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -616008 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -230935 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -11612 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -445711 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000010803 SCMH1 -995799 sc-eQTL 2.83e-01 -0.26 0.241 0.07 PB L2
ENSG00000043514 TRIT1 362844 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -71458 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -445293 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -98495 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 554173 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -11881 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 669565 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 457490 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 84968 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -285218 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 206122 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 148628 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -262386 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -733333 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -616008 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -230935 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 475007 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -11612 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -445711 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000010803 SCMH1 -995799 sc-eQTL 8.82e-01 0.0265 0.179 0.05 Pro_T L2
ENSG00000043514 TRIT1 362844 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -445293 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -98495 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 554173 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -11881 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 669565 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 457490 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 84968 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -285218 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 206122 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 148628 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -262386 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 291243 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -733333 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -616008 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -203747 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -230935 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 475007 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -11612 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -445711 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -11881 2.2e-05 2.51e-05 5.89e-06 1.45e-05 5.58e-06 1.29e-05 3.74e-05 4.28e-06 2.41e-05 1.22e-05 3.13e-05 1.37e-05 4.4e-05 1.14e-05 6.2e-06 1.53e-05 1.48e-05 2.21e-05 8.18e-06 7.59e-06 1.41e-05 2.62e-05 2.61e-05 1.05e-05 3.84e-05 7.42e-06 1.12e-05 1.08e-05 2.91e-05 3.48e-05 1.59e-05 1.71e-06 3.49e-06 8.21e-06 1.11e-05 7.06e-06 3.69e-06 3.42e-06 6.12e-06 4.01e-06 1.85e-06 3.18e-05 2.98e-06 5.27e-07 2.75e-06 4.06e-06 4.05e-06 1.93e-06 1.5e-06
ENSG00000117000 \N 84968 5.72e-06 6.3e-06 7.72e-07 3.48e-06 1.82e-06 1.81e-06 8.61e-06 1.29e-06 4.75e-06 3.32e-06 7.96e-06 2.93e-06 1.01e-05 2.5e-06 1.17e-06 4.63e-06 3.01e-06 3.84e-06 2.15e-06 2.16e-06 3.16e-06 6.84e-06 5.31e-06 2.36e-06 9.25e-06 2.37e-06 3.41e-06 2.11e-06 6.66e-06 7.44e-06 3.38e-06 5.5e-07 9.16e-07 2.79e-06 2.12e-06 2.08e-06 1.43e-06 9.08e-07 1.38e-06 9.09e-07 1.03e-06 8.36e-06 6.73e-07 1.5e-07 6.86e-07 1.01e-06 9.51e-07 6.09e-07 5.64e-07
ENSG00000117016 \N -419327 1.31e-06 8.34e-07 1.96e-07 4.55e-07 1.38e-07 3.39e-07 7.02e-07 2.47e-07 8.08e-07 3.05e-07 1.07e-06 5.53e-07 1.16e-06 1.97e-07 4.15e-07 4.47e-07 5.64e-07 4.72e-07 3.51e-07 3.57e-07 2.26e-07 5.71e-07 4.77e-07 3.27e-07 1.38e-06 2.41e-07 4.91e-07 4.71e-07 6.76e-07 8.38e-07 4.26e-07 4.28e-08 9.79e-08 2.29e-07 3.37e-07 2.58e-07 1.83e-07 1.23e-07 7.63e-08 9.61e-09 2.39e-07 9.14e-07 5.78e-08 1.05e-08 1.84e-07 4.43e-08 1.46e-07 3.84e-08 5.4e-08
ENSG00000131238 \N 148628 4.03e-06 3.82e-06 6.94e-07 1.97e-06 1.12e-06 8.28e-07 2.52e-06 9.8e-07 3.07e-06 1.67e-06 3.76e-06 2.5e-06 6.16e-06 1.36e-06 1.2e-06 2.43e-06 1.75e-06 2.33e-06 1.39e-06 9.52e-07 1.92e-06 3.79e-06 3.45e-06 1.71e-06 4.66e-06 1.28e-06 1.82e-06 1.43e-06 3.87e-06 3.32e-06 2e-06 5.76e-07 7.93e-07 1.8e-06 1.76e-06 9.44e-07 9.7e-07 4.71e-07 1.19e-06 3.98e-07 4.57e-07 4.58e-06 5.44e-07 1.8e-07 3.74e-07 3.41e-07 6.81e-07 2.4e-07 3.21e-07
ENSG00000187801 \N -203752 2.21e-06 2.44e-06 3.1e-07 1.58e-06 4.71e-07 7.75e-07 1.55e-06 6.11e-07 1.75e-06 8.25e-07 2.11e-06 1.35e-06 3.49e-06 1.14e-06 7e-07 1.52e-06 1.07e-06 1.9e-06 7.85e-07 1.21e-06 9.25e-07 2.57e-06 2.1e-06 1.03e-06 2.95e-06 1.29e-06 1.23e-06 1.49e-06 1.92e-06 1.67e-06 1.21e-06 2.87e-07 5.18e-07 1.23e-06 9.17e-07 8.92e-07 8.1e-07 4.41e-07 1.03e-06 3.78e-07 2.11e-07 3.03e-06 3.86e-07 1.91e-07 2.99e-07 3.31e-07 6.24e-07 2.19e-07 2.1e-07
ENSG00000259943 \N -11612 2.22e-05 2.54e-05 6e-06 1.47e-05 5.6e-06 1.31e-05 3.81e-05 4.37e-06 2.44e-05 1.23e-05 3.16e-05 1.38e-05 4.46e-05 1.16e-05 6.24e-06 1.56e-05 1.5e-05 2.23e-05 8.31e-06 7.67e-06 1.42e-05 2.64e-05 2.63e-05 1.06e-05 3.87e-05 7.46e-06 1.14e-05 1.1e-05 2.94e-05 3.51e-05 1.6e-05 1.72e-06 3.57e-06 8.22e-06 1.12e-05 7.17e-06 3.82e-06 3.44e-06 6.08e-06 3.93e-06 1.87e-06 3.22e-05 2.95e-06 5.27e-07 2.73e-06 4.15e-06 4.08e-06 1.98e-06 1.5e-06
ENSG00000261798 \N 457379 1.05e-06 6.56e-07 1.45e-07 4.31e-07 9.77e-08 2.64e-07 6.08e-07 1.76e-07 6.27e-07 2.88e-07 9.46e-07 5.01e-07 9.77e-07 1.54e-07 3.16e-07 3.4e-07 4.3e-07 4.27e-07 2.79e-07 2.27e-07 2.38e-07 5.17e-07 4.13e-07 2.6e-07 1.02e-06 2.57e-07 4.27e-07 3.78e-07 5.03e-07 6.81e-07 3.66e-07 5.25e-08 4.83e-08 1.69e-07 3.47e-07 1.55e-07 1.09e-07 1.06e-07 7.81e-08 8.51e-09 1.45e-07 7.04e-07 4.41e-08 1.89e-08 2.03e-07 2.68e-08 1.08e-07 2.35e-08 6.17e-08