logo

Genes within 1Mb (chr1:40243217:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000010803 SCMH1 -998937 sc-eQTL 5.91e-01 -0.105 0.195 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 359706 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -74596 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -448431 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -101633 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 551035 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -15019 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 666427 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 551732 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 81830 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -288356 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 202984 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 145490 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -265524 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -736471 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -619146 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -206885 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -234073 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -14750 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -448849 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000010803 SCMH1 -998937 sc-eQTL 2.47e-01 -0.226 0.194 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 359706 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -448431 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -101633 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 551035 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -15019 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 666427 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 454352 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 81830 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -288356 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 202984 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 145490 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -265524 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -736471 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -619146 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -234073 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -14750 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -448849 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000010803 SCMH1 -998937 sc-eQTL 2.83e-01 -0.26 0.241 0.07 PB L2
ENSG00000043514 TRIT1 359706 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -74596 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -448431 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -101633 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 551035 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -15019 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 666427 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 454352 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 81830 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -288356 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 202984 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 145490 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -265524 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -736471 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -619146 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -234073 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 471869 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -14750 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -448849 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000010803 SCMH1 -998937 sc-eQTL 8.82e-01 0.0265 0.179 0.05 Pro_T L2
ENSG00000043514 TRIT1 359706 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -448431 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -101633 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 551035 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -15019 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 666427 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 454352 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 81830 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -288356 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 202984 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 145490 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -265524 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 288105 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -736471 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -619146 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -206885 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -234073 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 471869 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -14750 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -448849 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -448472 eQTL 0.0459 -0.0414 0.0207 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 551732 eQTL 0.0222 -0.0772 0.0337 0.0 0.0 0.0491
ENSG00000117000 RLF 81830 eQTL 1.49e-14 0.2 0.0256 0.00525 0.00538 0.0491
ENSG00000117013 KCNQ4 -540570 eQTL 1.10e-02 -0.204 0.0803 0.0 0.0 0.0491
ENSG00000131238 PPT1 145490 eQTL 1.12e-27 0.702 0.0624 0.0 0.0 0.0491
ENSG00000164002 EXO5 -265524 eQTL 8.34e-03 -0.129 0.0488 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -206890 eQTL 0.0427 -0.125 0.0618 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 -14750 eQTL 1.44e-08 -0.254 0.0444 0.0 0.00465 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -15019 2.34e-05 2.63e-05 5.75e-06 1.48e-05 5.25e-06 1.31e-05 3.84e-05 3.86e-06 2.53e-05 1.23e-05 3.19e-05 1.44e-05 4.34e-05 1.17e-05 6.24e-06 1.51e-05 1.52e-05 2.19e-05 7.91e-06 7.07e-06 1.32e-05 2.64e-05 2.61e-05 9.82e-06 3.91e-05 6.74e-06 1.12e-05 1.07e-05 2.89e-05 3.25e-05 1.66e-05 1.63e-06 2.95e-06 7.75e-06 1.11e-05 6.24e-06 3.57e-06 3.17e-06 5.29e-06 3.69e-06 1.83e-06 3.22e-05 2.93e-06 4.11e-07 2.45e-06 3.67e-06 3.88e-06 1.6e-06 1.51e-06
ENSG00000117000 RLF 81830 7.84e-06 9.51e-06 1.36e-06 4.96e-06 2.22e-06 3.93e-06 1.01e-05 1.54e-06 7.7e-06 4.2e-06 1.06e-05 5.02e-06 1.34e-05 3.85e-06 2.13e-06 5.93e-06 4.13e-06 6.15e-06 2.53e-06 2.69e-06 4.51e-06 7.94e-06 6.85e-06 3.3e-06 1.31e-05 2.79e-06 4.33e-06 3.16e-06 8.29e-06 8.58e-06 4.72e-06 9.97e-07 1.31e-06 3.01e-06 3.64e-06 2.28e-06 1.73e-06 1.85e-06 2.01e-06 9.68e-07 1.01e-06 1.18e-05 1.02e-06 1.9e-07 6.91e-07 1.31e-06 1.09e-06 6.99e-07 5.78e-07
ENSG00000117016 \N -422465 1.07e-06 6.97e-07 1.23e-07 4.36e-07 1.07e-07 3.08e-07 6.09e-07 1.4e-07 5.88e-07 2.81e-07 9.46e-07 4.62e-07 1.02e-06 1.57e-07 2.77e-07 2.89e-07 5.27e-07 4.33e-07 2.6e-07 1.9e-07 2.3e-07 4.79e-07 4.13e-07 2.24e-07 1.22e-06 2.6e-07 3.16e-07 2.98e-07 4.39e-07 7.92e-07 3.66e-07 5.71e-08 5.86e-08 1.79e-07 3.68e-07 1.49e-07 1.11e-07 1.02e-07 7.9e-08 2.24e-08 1.02e-07 7.53e-07 2.92e-08 5.61e-09 1.14e-07 1.52e-08 1.24e-07 2.48e-08 5.43e-08
ENSG00000131238 PPT1 145490 4.46e-06 4.77e-06 8.7e-07 2.73e-06 1.12e-06 1.53e-06 4.07e-06 9.98e-07 4.57e-06 2.08e-06 4.85e-06 3.52e-06 7.05e-06 2.25e-06 1.42e-06 2.78e-06 1.92e-06 3.05e-06 1.39e-06 1.01e-06 2.62e-06 4.6e-06 3.72e-06 1.38e-06 5.99e-06 1.33e-06 2.35e-06 1.79e-06 4.26e-06 4.28e-06 2.53e-06 4.91e-07 6.12e-07 1.75e-06 2.09e-06 9.77e-07 9.36e-07 4.76e-07 9.29e-07 4.07e-07 4.53e-07 5.74e-06 4.65e-07 1.58e-07 4.29e-07 3.94e-07 7.44e-07 3.79e-07 2.55e-07
ENSG00000187801 ZFP69B -206890 2.75e-06 2.52e-06 3.08e-07 1.68e-06 4.74e-07 8.43e-07 1.87e-06 4.41e-07 1.8e-06 8.51e-07 2.38e-06 1.29e-06 3.5e-06 1.31e-06 6.04e-07 1.24e-06 1.19e-06 2.12e-06 7.34e-07 1.16e-06 9.57e-07 2.75e-06 2.13e-06 1.02e-06 3.6e-06 1.17e-06 1.19e-06 1.45e-06 1.91e-06 2.11e-06 1.64e-06 3.05e-07 6.41e-07 1.2e-06 1.09e-06 8.79e-07 8.3e-07 4.49e-07 1.11e-06 3.75e-07 2.44e-07 3.32e-06 4.33e-07 2.06e-07 3.57e-07 3.21e-07 4.62e-07 2.23e-07 2.82e-07
ENSG00000259943 AL050341.2 -14750 2.37e-05 2.65e-05 5.8e-06 1.49e-05 5.25e-06 1.31e-05 3.87e-05 3.9e-06 2.55e-05 1.25e-05 3.19e-05 1.44e-05 4.4e-05 1.2e-05 6.25e-06 1.51e-05 1.53e-05 2.21e-05 7.91e-06 7.1e-06 1.34e-05 2.64e-05 2.61e-05 9.89e-06 3.96e-05 6.8e-06 1.13e-05 1.08e-05 2.91e-05 3.28e-05 1.68e-05 1.63e-06 3.02e-06 7.83e-06 1.12e-05 6.29e-06 3.58e-06 3.21e-06 5.37e-06 3.69e-06 1.77e-06 3.22e-05 2.95e-06 4.11e-07 2.49e-06 3.72e-06 3.96e-06 1.65e-06 1.52e-06
ENSG00000261798 \N 454241 8.85e-07 6.07e-07 9.89e-08 4.08e-07 9.72e-08 2.46e-07 5.65e-07 9.91e-08 4.3e-07 2.39e-07 7.15e-07 3.73e-07 9.23e-07 1.49e-07 1.9e-07 2.18e-07 3.63e-07 3.95e-07 1.89e-07 1.53e-07 1.92e-07 3.87e-07 3.7e-07 1.63e-07 8.99e-07 2.42e-07 2.52e-07 2.65e-07 3.58e-07 6.42e-07 2.93e-07 6.2e-08 4.35e-08 1.54e-07 3.48e-07 9.51e-08 1.09e-07 9.46e-08 6.72e-08 2.53e-08 7.48e-08 6.15e-07 1.67e-08 1.54e-08 9.79e-08 1.31e-08 8.01e-08 1.26e-08 5.71e-08