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Genes within 1Mb (chr1:40239727:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 356216 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -78086 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -451921 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -105123 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 547545 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -18509 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 662937 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 548242 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 78340 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -291846 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 199494 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 142000 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -269014 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -739961 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -622636 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -210375 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -237563 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -18240 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -452339 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 356216 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -451921 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -105123 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 547545 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -18509 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 662937 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 450862 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 78340 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -291846 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 199494 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 142000 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -269014 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -739961 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -622636 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -237563 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -18240 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -452339 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 356216 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -78086 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -451921 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -105123 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 547545 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -18509 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 662937 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 450862 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 78340 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -291846 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 199494 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 142000 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -269014 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -739961 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -622636 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -237563 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 468379 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -18240 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -452339 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 356216 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -451921 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -105123 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 547545 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -18509 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 662937 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 450862 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 78340 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -291846 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 199494 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 142000 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -269014 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 284615 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -739961 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -622636 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -210375 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -237563 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 468379 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -18240 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -452339 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -451962 eQTL 0.0456 -0.0414 0.0207 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 548242 eQTL 0.0221 -0.0772 0.0337 0.0 0.0 0.0491
ENSG00000117000 RLF 78340 eQTL 1.49e-14 0.2 0.0256 0.00525 0.00537 0.0491
ENSG00000117013 KCNQ4 -544060 eQTL 1.08e-02 -0.205 0.0803 0.0 0.0 0.0491
ENSG00000131238 PPT1 142000 eQTL 1.09e-27 0.702 0.0623 0.0 0.0 0.0491
ENSG00000164002 EXO5 -269014 eQTL 8.44e-03 -0.129 0.0488 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -210380 eQTL 0.0426 -0.125 0.0617 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 -18240 eQTL 1.44e-08 -0.254 0.0444 0.0 0.00444 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -18509 2.31e-05 2.65e-05 4.54e-06 1.35e-05 4.08e-06 1.03e-05 3.49e-05 3.8e-06 2.24e-05 1.17e-05 2.96e-05 1.25e-05 3.88e-05 1.17e-05 6.2e-06 1.4e-05 1.38e-05 2.01e-05 6.45e-06 5.62e-06 1.15e-05 2.57e-05 2.5e-05 7.31e-06 3.46e-05 6.17e-06 9.99e-06 9.74e-06 2.54e-05 2.19e-05 1.47e-05 1.66e-06 2.38e-06 6.04e-06 9.6e-06 4.55e-06 2.56e-06 2.96e-06 3.98e-06 2.88e-06 1.63e-06 3.18e-05 3.04e-06 2.36e-07 2.01e-06 3.29e-06 3.62e-06 1.51e-06 1.27e-06
ENSG00000117000 RLF 78340 7.89e-06 1.18e-05 1.33e-06 6.53e-06 2.21e-06 3.97e-06 1.14e-05 2.13e-06 1.02e-05 5.39e-06 1.29e-05 5.44e-06 1.68e-05 3.97e-06 3.17e-06 6.73e-06 4.9e-06 7.6e-06 2.65e-06 2.92e-06 5.18e-06 1.04e-05 8.1e-06 3.26e-06 1.53e-05 3.68e-06 5.21e-06 4.59e-06 1.02e-05 8.21e-06 5.8e-06 1.07e-06 1.1e-06 2.99e-06 4.89e-06 2.56e-06 1.82e-06 1.87e-06 2.23e-06 9.68e-07 9.82e-07 1.36e-05 1.38e-06 1.95e-07 7.51e-07 1.73e-06 1.28e-06 7.75e-07 4.71e-07
ENSG00000117016 \N -425955 1.24e-06 9.48e-07 2.74e-07 5.92e-07 2.48e-07 4.23e-07 1.26e-06 3.28e-07 1.38e-06 4.7e-07 1.41e-06 6.6e-07 2.01e-06 3.07e-07 5.22e-07 9.17e-07 8.26e-07 5.75e-07 8.26e-07 4.48e-07 3.6e-07 1.6e-06 7.79e-07 5.1e-07 2.29e-06 2.89e-07 8.22e-07 7.2e-07 1.19e-06 1.12e-06 5.91e-07 4.97e-08 1.35e-07 4.51e-07 4.36e-07 4.6e-07 5.12e-07 1.24e-07 2.18e-07 8.43e-09 1.95e-07 1.43e-06 5.07e-08 1.89e-07 1.82e-07 1.29e-07 1.87e-07 5.92e-08 1.09e-07
ENSG00000131238 PPT1 142000 4.6e-06 6.92e-06 6.57e-07 3.52e-06 1.64e-06 1.6e-06 7.61e-06 1.24e-06 4.88e-06 3.09e-06 7.7e-06 2.94e-06 1.02e-05 2.85e-06 9.81e-07 4.63e-06 2.76e-06 3.98e-06 1.47e-06 1.37e-06 2.89e-06 7e-06 4.73e-06 1.57e-06 8.97e-06 2.05e-06 2.95e-06 1.76e-06 5.34e-06 5e-06 2.93e-06 5.23e-07 7.66e-07 1.6e-06 2.38e-06 1.07e-06 1.07e-06 4.39e-07 9.96e-07 5.02e-07 4.94e-07 8.42e-06 6.91e-07 1.33e-07 4.86e-07 9.54e-07 1.13e-06 6.09e-07 5.96e-07
ENSG00000187801 ZFP69B -210380 3.61e-06 4.55e-06 7.84e-07 2.1e-06 6.82e-07 7.56e-07 2.84e-06 1.01e-06 4.09e-06 1.99e-06 4.22e-06 2.72e-06 6.77e-06 2.04e-06 1.26e-06 2.99e-06 1.82e-06 2.36e-06 1.45e-06 1.21e-06 1.64e-06 4.42e-06 3.24e-06 1.66e-06 4.97e-06 1.21e-06 2.15e-06 1.48e-06 3.8e-06 3.08e-06 1.89e-06 5.09e-07 5.88e-07 1.35e-06 1.99e-06 8.85e-07 9.38e-07 4.09e-07 1.34e-06 3.98e-07 1.96e-07 4.65e-06 3.96e-07 1.61e-07 3.04e-07 3.93e-07 8.74e-07 4.43e-07 3.25e-07
ENSG00000259943 AL050341.2 -18240 2.34e-05 2.65e-05 4.54e-06 1.35e-05 4.14e-06 1.04e-05 3.55e-05 3.8e-06 2.24e-05 1.19e-05 2.96e-05 1.26e-05 3.91e-05 1.17e-05 6.24e-06 1.4e-05 1.38e-05 2.02e-05 6.52e-06 5.62e-06 1.15e-05 2.59e-05 2.5e-05 7.36e-06 3.46e-05 6.12e-06 1.01e-05 9.9e-06 2.54e-05 2.21e-05 1.5e-05 1.65e-06 2.38e-06 6.16e-06 9.6e-06 4.59e-06 2.56e-06 2.96e-06 3.98e-06 2.88e-06 1.63e-06 3.18e-05 3.04e-06 2.5e-07 2.01e-06 3.29e-06 3.67e-06 1.52e-06 1.27e-06
ENSG00000261798 \N 450751 1.25e-06 9.37e-07 3.49e-07 3.89e-07 2.05e-07 3.36e-07 1.1e-06 3.2e-07 1.15e-06 4.11e-07 1.35e-06 6.03e-07 1.95e-06 2.9e-07 5.65e-07 8.25e-07 7.7e-07 5.66e-07 6.91e-07 3.42e-07 2.89e-07 1.33e-06 6.63e-07 4.55e-07 2.01e-06 2.7e-07 6.85e-07 5.8e-07 9.65e-07 1.02e-06 5.47e-07 3.7e-08 1.05e-07 3.58e-07 4.2e-07 3.94e-07 4.68e-07 1.24e-07 1.44e-07 2.26e-08 1.2e-07 1.19e-06 5.58e-08 1.98e-07 1.73e-07 1.01e-07 1.71e-07 3.68e-08 8.37e-08