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Genes within 1Mb (chr1:40232787:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 349276 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -85026 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -458861 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -112063 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 540605 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -25449 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 655997 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 541302 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 71400 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -298786 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 192554 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 135060 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -275954 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -746901 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -629576 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -217315 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -244503 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -25180 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -459279 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 349276 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -458861 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -112063 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 540605 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -25449 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 655997 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 443922 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 71400 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -298786 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 192554 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 135060 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -275954 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -746901 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -629576 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -244503 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -25180 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -459279 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 349276 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -85026 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -458861 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -112063 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 540605 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -25449 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 655997 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 443922 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 71400 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -298786 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 192554 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 135060 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -275954 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -746901 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -629576 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -244503 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 461439 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -25180 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -459279 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 349276 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -458861 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -112063 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 540605 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -25449 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 655997 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 443922 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 71400 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -298786 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 192554 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 135060 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -275954 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 277675 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -746901 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -629576 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -217315 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -244503 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 461439 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -25180 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -459279 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -458902 eQTL 0.0459 -0.0414 0.0207 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 541302 eQTL 0.0221 -0.0772 0.0337 0.0 0.0 0.0491
ENSG00000117000 RLF 71400 eQTL 1.48e-14 0.2 0.0256 0.00529 0.00541 0.0491
ENSG00000117013 KCNQ4 -551000 eQTL 1.09e-02 -0.205 0.0803 0.0 0.0 0.0491
ENSG00000131238 PPT1 135060 eQTL 1.09e-27 0.702 0.0624 0.0 0.0 0.0491
ENSG00000164002 EXO5 -275954 eQTL 8.41e-03 -0.129 0.0488 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -217320 eQTL 0.0431 -0.125 0.0618 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 -25180 eQTL 1.44e-08 -0.254 0.0444 0.0 0.00459 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -25449 4.1e-05 2.05e-05 2.57e-06 1.17e-05 2.55e-06 1.23e-05 2.53e-05 3.37e-06 1.7e-05 8.95e-06 2.13e-05 8.18e-06 3.22e-05 7.85e-06 5.23e-06 1.03e-05 1.05e-05 1.84e-05 4.15e-06 4.17e-06 8.58e-06 1.79e-05 1.91e-05 4.94e-06 2.78e-05 5.34e-06 8.01e-06 7.73e-06 1.69e-05 1.61e-05 1.07e-05 1.06e-06 1.4e-06 4.4e-06 7.28e-06 2.85e-06 1.76e-06 2.02e-06 2.99e-06 2.11e-06 1.05e-06 2.49e-05 3.58e-06 1.56e-07 1.37e-06 2.36e-06 2.57e-06 6.58e-07 4.53e-07
ENSG00000117000 RLF 71400 1.43e-05 1.3e-05 1.34e-06 7.53e-06 2.25e-06 6.12e-06 1.28e-05 2.23e-06 1.05e-05 5.61e-06 1.41e-05 5.85e-06 1.85e-05 4.2e-06 3.46e-06 6.58e-06 6.49e-06 9.66e-06 2.69e-06 2.85e-06 5.97e-06 1.07e-05 1.01e-05 3.2e-06 1.83e-05 3.75e-06 5.98e-06 4.68e-06 1.1e-05 9.23e-06 6.28e-06 9.58e-07 1.21e-06 3.29e-06 5.01e-06 2.05e-06 1.55e-06 1.84e-06 2.2e-06 9.85e-07 8.13e-07 1.48e-05 2.43e-06 1.63e-07 8.02e-07 1.71e-06 1.4e-06 6.94e-07 5.97e-07
ENSG00000117016 \N -432895 1.3e-06 1.36e-06 2.74e-07 1.26e-06 2.98e-07 6.45e-07 1.47e-06 3.54e-07 1.38e-06 6.05e-07 1.82e-06 7e-07 2.51e-06 3.39e-07 5.37e-07 9.42e-07 1.02e-06 8.55e-07 8.13e-07 6.49e-07 7.85e-07 1.72e-06 1.09e-06 6.4e-07 2.41e-06 4.36e-07 8.73e-07 8.04e-07 1.33e-06 1.21e-06 7.58e-07 2.62e-07 2e-07 7.03e-07 5.49e-07 4.09e-07 5.02e-07 2.26e-07 4.97e-07 3.35e-07 2.97e-07 1.58e-06 2.33e-07 9.64e-08 1.93e-07 2.29e-07 2.56e-07 3.7e-08 9.42e-08
ENSG00000131238 PPT1 135060 7.82e-06 9.21e-06 5.86e-07 4.15e-06 1.66e-06 3.7e-06 9.45e-06 1.26e-06 5.51e-06 3.8e-06 8.88e-06 3.23e-06 1.12e-05 3.58e-06 1.32e-06 4.63e-06 3.67e-06 3.89e-06 1.5e-06 1.55e-06 3.12e-06 7.55e-06 5.59e-06 1.71e-06 1.09e-05 2.1e-06 3.4e-06 2.09e-06 6.27e-06 6.7e-06 3.57e-06 4.15e-07 4.82e-07 2.2e-06 2.47e-06 9.89e-07 9.48e-07 4.7e-07 9.26e-07 8.18e-07 4.4e-07 8.35e-06 1.23e-06 1.8e-07 5.64e-07 8.05e-07 9.9e-07 6.9e-07 3.26e-07
ENSG00000187801 ZFP69B -217320 4.54e-06 5e-06 6.66e-07 2.89e-06 8e-07 1.7e-06 4.17e-06 1.01e-06 4.57e-06 2.13e-06 4.33e-06 3.04e-06 7.77e-06 2.46e-06 1.37e-06 2.63e-06 1.8e-06 2.9e-06 1.45e-06 1.05e-06 2.62e-06 4.5e-06 3.72e-06 1.62e-06 6.11e-06 1.17e-06 2e-06 1.57e-06 4.15e-06 3.75e-06 2.12e-06 6.26e-07 6e-07 1.59e-06 2.08e-06 9.27e-07 9.22e-07 4.67e-07 1.28e-06 3.42e-07 1.52e-07 5.47e-06 4.02e-07 1.95e-07 2.88e-07 6.74e-07 7.91e-07 2.49e-07 2.04e-07
ENSG00000259943 AL050341.2 -25180 4.16e-05 2.05e-05 2.54e-06 1.17e-05 2.6e-06 1.24e-05 2.53e-05 3.37e-06 1.71e-05 8.98e-06 2.13e-05 8.18e-06 3.22e-05 7.86e-06 5.23e-06 1.03e-05 1.05e-05 1.87e-05 4.15e-06 4.15e-06 8.57e-06 1.81e-05 1.91e-05 4.96e-06 2.8e-05 5.34e-06 8.01e-06 7.76e-06 1.69e-05 1.63e-05 1.07e-05 1e-06 1.4e-06 4.4e-06 7.28e-06 2.81e-06 1.73e-06 2.02e-06 2.95e-06 2.11e-06 1.05e-06 2.49e-05 3.63e-06 1.56e-07 1.37e-06 2.36e-06 2.57e-06 6.45e-07 4.52e-07
ENSG00000261798 \N 443811 1.29e-06 1.25e-06 3.12e-07 1.26e-06 2.71e-07 6.4e-07 1.48e-06 3.5e-07 1.5e-06 6.14e-07 1.75e-06 6.6e-07 2.51e-06 3.24e-07 5.62e-07 9.13e-07 9.57e-07 7.83e-07 7.55e-07 6.9e-07 8.07e-07 1.72e-06 9.91e-07 6.23e-07 2.42e-06 3.87e-07 8.29e-07 7.24e-07 1.35e-06 1.25e-06 7.05e-07 2.44e-07 2.17e-07 6.95e-07 5.23e-07 3.95e-07 5.03e-07 2.29e-07 4.1e-07 2.99e-07 2.44e-07 1.62e-06 1.67e-07 8.08e-08 1.64e-07 2.36e-07 2.39e-07 5.35e-08 8.37e-08