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Genes within 1Mb (chr1:40228935:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 345424 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -88878 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -462713 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -115915 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 536753 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -29301 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 652145 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 537450 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 67548 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -302638 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 188702 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 131208 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -279806 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -750753 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -633428 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -221167 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -248355 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -29032 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -463131 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 345424 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -462713 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -115915 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 536753 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -29301 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 652145 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 440070 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 67548 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -302638 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 188702 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 131208 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -279806 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -750753 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -633428 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -248355 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -29032 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -463131 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 345424 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -88878 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -462713 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -115915 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 536753 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -29301 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 652145 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 440070 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 67548 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -302638 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 188702 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 131208 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -279806 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -750753 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -633428 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -248355 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 457587 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -29032 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -463131 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 345424 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -462713 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -115915 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 536753 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -29301 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 652145 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 440070 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 67548 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -302638 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 188702 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 131208 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -279806 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 273823 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -750753 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -633428 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -221167 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -248355 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 457587 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -29032 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -463131 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -462754 eQTL 0.0439 -0.0418 0.0207 0.0 0.0 0.0491
ENSG00000116983 HPCAL4 537450 eQTL 0.0251 -0.0755 0.0337 0.0 0.0 0.0491
ENSG00000117000 RLF 67548 eQTL 1.22e-14 0.201 0.0256 0.00628 0.00653 0.0491
ENSG00000117013 KCNQ4 -554852 eQTL 1.13e-02 -0.204 0.0802 0.0 0.0 0.0491
ENSG00000131238 PPT1 131208 eQTL 8.51e-28 0.703 0.0623 0.0 0.0 0.0491
ENSG00000164002 EXO5 -279806 eQTL 8.45e-03 -0.129 0.0488 0.0 0.0 0.0491
ENSG00000187801 ZFP69B -221172 eQTL 0.0473 -0.123 0.0617 0.0 0.0 0.0491
ENSG00000259943 AL050341.2 -29032 eQTL 8.79e-09 -0.257 0.0443 0.0 0.0123 0.0491

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -29301 1.24e-05 1.3e-05 2.59e-06 7.87e-06 2.34e-06 6.12e-06 1.64e-05 2.19e-06 1.14e-05 6e-06 1.59e-05 6.5e-06 2.17e-05 4.75e-06 4.13e-06 8.04e-06 6.86e-06 1.11e-05 3.55e-06 3.29e-06 6.51e-06 1.2e-05 1.24e-05 4.11e-06 2.14e-05 4.45e-06 7.18e-06 5.4e-06 1.44e-05 1.31e-05 7.72e-06 1.02e-06 1.32e-06 3.89e-06 5.59e-06 2.81e-06 1.73e-06 2.13e-06 2.23e-06 1.42e-06 1.11e-06 1.67e-05 1.87e-06 1.97e-07 1.05e-06 1.95e-06 2.02e-06 7.25e-07 5.7e-07
ENSG00000117000 RLF 67548 6.95e-06 7.87e-06 8.27e-07 3.81e-06 1.74e-06 2.71e-06 9.09e-06 1.31e-06 4.79e-06 3.41e-06 8.47e-06 3.41e-06 1.04e-05 3.18e-06 1.46e-06 4.64e-06 3.28e-06 3.77e-06 1.81e-06 1.8e-06 3.19e-06 6.89e-06 5.56e-06 1.91e-06 9.65e-06 2.35e-06 3.47e-06 1.86e-06 6.89e-06 7.53e-06 3.37e-06 4.43e-07 7.94e-07 2.63e-06 2.36e-06 1.55e-06 1.04e-06 8.97e-07 1.41e-06 7.21e-07 7.51e-07 8.1e-06 8.82e-07 1.53e-07 7.75e-07 9.29e-07 9.03e-07 7.1e-07 5.8e-07
ENSG00000117016 \N -436747 8.48e-07 4.78e-07 9.71e-08 3.58e-07 1.07e-07 2.09e-07 5.28e-07 1.09e-07 3.51e-07 2.06e-07 4.74e-07 3.3e-07 6.08e-07 1.1e-07 1.78e-07 1.96e-07 2.07e-07 3.56e-07 1.69e-07 1.24e-07 1.8e-07 3.1e-07 3.11e-07 1.25e-07 6.65e-07 2.36e-07 2.52e-07 1.97e-07 3.43e-07 4.51e-07 2.31e-07 8.14e-08 5.38e-08 1.15e-07 3e-07 6.94e-08 8.07e-08 7.98e-08 4.11e-08 6.07e-08 7.96e-08 4.04e-07 2.99e-08 1.57e-08 1.1e-07 1.84e-08 8.13e-08 3.25e-09 5.35e-08
ENSG00000131238 PPT1 131208 4.35e-06 3.82e-06 5.75e-07 1.97e-06 7.73e-07 9.88e-07 2.37e-06 9.98e-07 2.44e-06 1.42e-06 3.32e-06 1.98e-06 5e-06 1.25e-06 9.86e-07 1.97e-06 1.58e-06 2.1e-06 1.59e-06 1.21e-06 1.5e-06 3.38e-06 3.3e-06 1.62e-06 4.61e-06 1.24e-06 1.74e-06 1.76e-06 3.9e-06 2.95e-06 1.98e-06 3.27e-07 6.01e-07 1.45e-06 1.84e-06 9.4e-07 8.05e-07 4.3e-07 1.23e-06 4.17e-07 2.4e-07 4.17e-06 4.64e-07 1.98e-07 3.45e-07 3.61e-07 8.16e-07 2.02e-07 1.74e-07
ENSG00000187801 ZFP69B -221172 1.64e-06 1.3e-06 2.77e-07 1.2e-06 3.83e-07 6.52e-07 1.41e-06 4.01e-07 1.68e-06 5.9e-07 2.07e-06 9.11e-07 2.51e-06 3.36e-07 4.76e-07 9.92e-07 9.18e-07 1.06e-06 7.2e-07 4.83e-07 7.96e-07 1.91e-06 1.14e-06 6.47e-07 2.46e-06 7.81e-07 1.04e-06 9.25e-07 1.63e-06 1.3e-06 8.57e-07 2.07e-07 2.89e-07 6.11e-07 5.52e-07 4.6e-07 6.22e-07 2.97e-07 4.89e-07 2.88e-07 2.82e-07 1.86e-06 3.51e-07 5.72e-08 2.83e-07 2.11e-07 2.79e-07 5.92e-08 1.83e-07
ENSG00000259943 AL050341.2 -29032 1.25e-05 1.31e-05 2.53e-06 7.82e-06 2.36e-06 6.16e-06 1.65e-05 2.16e-06 1.15e-05 6.01e-06 1.6e-05 6.53e-06 2.18e-05 4.76e-06 4.14e-06 8.06e-06 6.9e-06 1.11e-05 3.62e-06 3.36e-06 6.47e-06 1.2e-05 1.24e-05 4.21e-06 2.16e-05 4.5e-06 7.14e-06 5.32e-06 1.44e-05 1.32e-05 7.81e-06 1.04e-06 1.33e-06 3.85e-06 5.63e-06 2.85e-06 1.75e-06 2.13e-06 2.26e-06 1.4e-06 1.1e-06 1.68e-05 1.97e-06 1.97e-07 1.05e-06 2.02e-06 2.03e-06 7.23e-07 5.68e-07
ENSG00000261798 \N 439959 8.63e-07 4.78e-07 1.05e-07 3.48e-07 1.1e-07 2.01e-07 5.2e-07 1.03e-07 3.32e-07 2.06e-07 4.64e-07 3.27e-07 6e-07 1.1e-07 1.71e-07 1.96e-07 1.85e-07 3.44e-07 1.62e-07 1.17e-07 1.76e-07 2.99e-07 3.04e-07 1.23e-07 6.59e-07 2.33e-07 2.57e-07 1.95e-07 3.27e-07 4.3e-07 2.31e-07 8.02e-08 5.73e-08 1.15e-07 2.82e-07 6.83e-08 7.97e-08 7.86e-08 4.04e-08 7.5e-08 6.39e-08 4.02e-07 2.47e-08 1.56e-08 1.08e-07 1.81e-08 8.01e-08 3.2e-09 5.54e-08