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Genes within 1Mb (chr1:40222143:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 338632 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -95670 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -469505 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -122707 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 529961 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -36093 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 645353 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 530658 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 60756 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -309430 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 181910 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 124416 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -286598 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -757545 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -640220 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -227959 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -255147 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -35824 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -469923 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 338632 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -469505 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -122707 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 529961 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -36093 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 645353 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 433278 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 60756 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -309430 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 181910 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 124416 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -286598 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -757545 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -640220 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -255147 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -35824 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -469923 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 338632 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -95670 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -469505 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -122707 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 529961 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -36093 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 645353 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 433278 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 60756 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -309430 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 181910 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 124416 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -286598 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -757545 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -640220 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -255147 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 450795 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -35824 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -469923 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 338632 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -469505 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -122707 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 529961 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -36093 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 645353 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 433278 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 60756 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -309430 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 181910 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 124416 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -286598 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 267031 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -757545 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -640220 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -227959 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -255147 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 450795 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -35824 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -469923 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -469546 eQTL 0.0446 -0.0419 0.0208 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 530658 eQTL 0.0266 -0.0753 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 60756 eQTL 2.24e-14 0.2 0.0258 0.00362 0.00343 0.0486
ENSG00000117013 KCNQ4 -561644 eQTL 8.36e-03 -0.213 0.0807 0.0 0.0 0.0486
ENSG00000131238 PPT1 124416 eQTL 1.44e-27 0.704 0.0627 0.0 0.0 0.0486
ENSG00000164002 EXO5 -286598 eQTL 9.67e-03 -0.127 0.0491 0.0 0.0 0.0486
ENSG00000187801 ZFP69B -227964 eQTL 0.0499 -0.122 0.0621 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -35824 eQTL 3.29e-08 -0.249 0.0447 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -36093 1.41e-05 1.51e-05 2.97e-06 9.77e-06 2.32e-06 6.44e-06 2.04e-05 3.33e-06 1.64e-05 8.27e-06 2.13e-05 7.38e-06 2.57e-05 4.55e-06 4.33e-06 9.02e-06 7.72e-06 1.23e-05 3.58e-06 4.17e-06 7.56e-06 1.4e-05 1.32e-05 5.15e-06 2.31e-05 4.71e-06 7.59e-06 6.24e-06 1.61e-05 1.42e-05 1.11e-05 1.03e-06 1.23e-06 4.02e-06 6.89e-06 3.89e-06 1.79e-06 2.37e-06 2.08e-06 2.23e-06 1.29e-06 1.79e-05 2.14e-06 2.73e-07 1.84e-06 2.36e-06 2.32e-06 8.27e-07 1.4e-06
ENSG00000117000 RLF 60756 1.29e-05 1.24e-05 1.99e-06 7.79e-06 2.35e-06 5.13e-06 1.21e-05 2.48e-06 1.07e-05 5.73e-06 1.61e-05 5.76e-06 1.81e-05 3.66e-06 3.18e-06 6.87e-06 5.55e-06 9.07e-06 2.72e-06 2.84e-06 6.27e-06 1.07e-05 8.49e-06 3.7e-06 1.48e-05 3.72e-06 6.34e-06 4.75e-06 1.21e-05 9.42e-06 7.58e-06 1.01e-06 1.25e-06 3.43e-06 5.33e-06 2.82e-06 1.72e-06 1.86e-06 1.99e-06 1.57e-06 9.63e-07 1.37e-05 1.61e-06 2.01e-07 9.58e-07 1.67e-06 1.75e-06 6.92e-07 1.02e-06
ENSG00000117016 \N -443539 1.27e-06 1.01e-06 3.48e-07 5.51e-07 9.86e-08 3.39e-07 6.09e-07 1.62e-07 7.56e-07 2.82e-07 1.15e-06 3.84e-07 1.16e-06 2.14e-07 4.6e-07 3.68e-07 6.07e-07 4.72e-07 3.98e-07 1.76e-07 2.43e-07 5.76e-07 4.06e-07 2.49e-07 1.22e-06 2.7e-07 4.27e-07 4.77e-07 4.39e-07 5.82e-07 4.65e-07 8.25e-08 4.77e-08 1.71e-07 3.69e-07 2.04e-07 8.6e-08 6.66e-08 6.72e-08 8.22e-09 4.83e-08 7.45e-07 6.28e-08 1.1e-08 1.94e-07 7.03e-08 9.95e-08 1.15e-08 6.51e-08
ENSG00000131238 PPT1 124416 9.14e-06 9.23e-06 7.35e-07 4.15e-06 1.32e-06 2.1e-06 8.17e-06 1.25e-06 4.75e-06 3.1e-06 9e-06 3.33e-06 9.98e-06 2.07e-06 1.03e-06 4.19e-06 3.09e-06 3.86e-06 1.51e-06 1.4e-06 2.66e-06 6.84e-06 4.6e-06 2.03e-06 8.24e-06 1.98e-06 2.88e-06 1.8e-06 5.8e-06 5.27e-06 3.67e-06 4.18e-07 7.38e-07 2.18e-06 1.97e-06 1.54e-06 1.06e-06 4.58e-07 8.58e-07 9.55e-07 5.21e-07 8.5e-06 7.84e-07 1.57e-07 7.45e-07 1.07e-06 1.12e-06 7.36e-07 4.27e-07
ENSG00000187801 ZFP69B -227964 4.53e-06 4.63e-06 6.04e-07 1.9e-06 4.41e-07 7.73e-07 1.8e-06 6.32e-07 1.89e-06 8.15e-07 2.77e-06 1.46e-06 3.52e-06 1.43e-06 9.23e-07 1.65e-06 1.59e-06 2.24e-06 1.08e-06 8.39e-07 1.14e-06 3.05e-06 2e-06 1.03e-06 3.36e-06 1.1e-06 1.27e-06 1.79e-06 1.89e-06 1.63e-06 2.02e-06 2.31e-07 4.72e-07 1.12e-06 9.03e-07 9.23e-07 7.53e-07 2.79e-07 6.22e-07 3.98e-07 2.72e-07 3.41e-06 6.52e-07 1.33e-07 3.75e-07 3.36e-07 3.77e-07 2.51e-07 3.52e-07
ENSG00000259943 AL050341.2 -35824 1.41e-05 1.51e-05 3.01e-06 9.8e-06 2.32e-06 6.44e-06 2.03e-05 3.41e-06 1.64e-05 8.27e-06 2.13e-05 7.33e-06 2.57e-05 4.67e-06 4.37e-06 9.02e-06 7.72e-06 1.23e-05 3.58e-06 4.17e-06 7.66e-06 1.41e-05 1.33e-05 5.14e-06 2.32e-05 4.58e-06 7.54e-06 6.29e-06 1.62e-05 1.42e-05 1.12e-05 1.03e-06 1.23e-06 4.02e-06 6.89e-06 3.89e-06 1.79e-06 2.39e-06 2.06e-06 2.23e-06 1.29e-06 1.8e-05 2.14e-06 2.73e-07 1.84e-06 2.35e-06 2.32e-06 8.24e-07 1.41e-06
ENSG00000261798 \N 433167 1.28e-06 1.03e-06 3.49e-07 6.35e-07 1.05e-07 3.26e-07 6.54e-07 1.78e-07 8.36e-07 2.87e-07 1.25e-06 4.21e-07 1.28e-06 2.08e-07 4.53e-07 4.14e-07 6.44e-07 5.05e-07 3.66e-07 1.9e-07 2.26e-07 5.66e-07 4.66e-07 2.68e-07 1.35e-06 2.74e-07 4.55e-07 4.94e-07 4.9e-07 6.27e-07 5.23e-07 7.71e-08 5.82e-08 1.79e-07 3.35e-07 2.59e-07 1.11e-07 6.11e-08 6.49e-08 8.66e-09 5.09e-08 9.49e-07 6.58e-08 5.54e-09 1.96e-07 7.29e-08 1.21e-07 1.2e-08 8.83e-08