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Genes within 1Mb (chr1:40221627:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 338116 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -96186 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -470021 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -123223 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 529445 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -36609 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 644837 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 530142 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 60240 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -309946 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 181394 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 123900 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -287114 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -758061 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -640736 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -228475 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -255663 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -36340 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -470439 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 338116 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -470021 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -123223 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 529445 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -36609 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 644837 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 432762 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 60240 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -309946 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 181394 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 123900 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -287114 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -758061 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -640736 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -255663 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -36340 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -470439 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 338116 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -96186 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -470021 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -123223 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 529445 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -36609 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 644837 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 432762 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 60240 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -309946 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 181394 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 123900 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -287114 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -758061 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -640736 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -255663 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 450279 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -36340 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -470439 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 338116 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -470021 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -123223 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 529445 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -36609 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 644837 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 432762 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 60240 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -309946 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 181394 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 123900 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -287114 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 266515 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -758061 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -640736 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -228475 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -255663 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 450279 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -36340 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -470439 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -470062 eQTL 0.0477 -0.0413 0.0209 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 530142 eQTL 0.0263 -0.0755 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 60240 eQTL 1.64e-14 0.201 0.0258 0.00497 0.00477 0.0486
ENSG00000117013 KCNQ4 -562160 eQTL 1.12e-02 -0.205 0.0808 0.0 0.0 0.0486
ENSG00000131238 PPT1 123900 eQTL 9.68e-28 0.708 0.0628 0.0 0.0 0.0486
ENSG00000164002 EXO5 -287114 eQTL 1.07e-02 -0.126 0.0492 0.0 0.0 0.0486
ENSG00000168389 MFSD2A 266515 eQTL 0.0488 -0.079 0.04 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -36340 eQTL 2.88e-08 -0.25 0.0447 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -36609 1.48e-05 1.93e-05 2.91e-06 1.03e-05 3.03e-06 6.82e-06 2.56e-05 2.53e-06 1.74e-05 8.35e-06 2.15e-05 8.22e-06 3.19e-05 7.53e-06 5.08e-06 9.71e-06 8.88e-06 1.4e-05 5.1e-06 4.21e-06 7.89e-06 1.7e-05 1.77e-05 5.06e-06 2.94e-05 4.96e-06 7.98e-06 7.57e-06 1.98e-05 1.67e-05 1.21e-05 1.26e-06 1.55e-06 4.13e-06 6.68e-06 3.73e-06 1.73e-06 2.4e-06 2.94e-06 1.76e-06 1.25e-06 2.36e-05 1.84e-06 2.96e-07 1.27e-06 2.47e-06 2.42e-06 8.29e-07 6.37e-07
ENSG00000117000 RLF 60240 1.11e-05 1.38e-05 1.98e-06 7.82e-06 2.34e-06 5.21e-06 1.93e-05 2.25e-06 1.29e-05 6.13e-06 1.6e-05 6.68e-06 2.38e-05 4.95e-06 3.97e-06 7.22e-06 6.86e-06 1e-05 3.6e-06 2.95e-06 6.39e-06 1.24e-05 1.21e-05 3.7e-06 2.4e-05 4.46e-06 6.4e-06 5.22e-06 1.54e-05 1.25e-05 8.68e-06 1.09e-06 1.24e-06 3.57e-06 5.11e-06 2.83e-06 1.87e-06 1.95e-06 2.03e-06 1.01e-06 9.26e-07 1.77e-05 1.43e-06 2.71e-07 8.18e-07 1.71e-06 1.76e-06 6.85e-07 4.52e-07
ENSG00000117016 \N -444055 1.32e-06 9.48e-07 3.29e-07 9.74e-07 2.71e-07 4.76e-07 1.57e-06 3.45e-07 1.29e-06 4.52e-07 1.39e-06 6.6e-07 2.25e-06 3.03e-07 5.36e-07 7.95e-07 8.26e-07 6.8e-07 7.08e-07 5.57e-07 4.48e-07 1.42e-06 8.93e-07 5.98e-07 2.27e-06 3.59e-07 7.97e-07 5.78e-07 1.48e-06 1.26e-06 7.03e-07 4.91e-08 1.81e-07 6.94e-07 4.36e-07 3.92e-07 4.26e-07 1.9e-07 3.33e-07 1.86e-08 1.45e-07 1.57e-06 5.49e-08 2.06e-07 1.83e-07 1.24e-07 1.6e-07 8.66e-08 9.23e-08
ENSG00000131238 PPT1 123900 7.05e-06 9.3e-06 9.85e-07 4.31e-06 1.87e-06 2.36e-06 1.01e-05 1.24e-06 6.96e-06 4.42e-06 8.96e-06 4.49e-06 1.22e-05 3.89e-06 2.12e-06 5.1e-06 3.68e-06 4.73e-06 2.55e-06 1.69e-06 3.13e-06 7.71e-06 6.69e-06 2.21e-06 1.26e-05 2.29e-06 3.62e-06 2.47e-06 8.8e-06 7.86e-06 4.46e-06 6.32e-07 7.05e-07 2.61e-06 2.42e-06 1.7e-06 1.03e-06 6.8e-07 1.27e-06 6.03e-07 7.1e-07 1.02e-05 6.29e-07 1.59e-07 7.28e-07 9.38e-07 1.03e-06 7.43e-07 5.29e-07
ENSG00000187801 \N -228480 4.35e-06 4.65e-06 7.57e-07 2.46e-06 7.98e-07 9.27e-07 4.13e-06 8.2e-07 3.9e-06 2.01e-06 3.74e-06 2.94e-06 7.44e-06 2.16e-06 1.35e-06 2.35e-06 1.8e-06 2.77e-06 1.5e-06 1.17e-06 1.8e-06 4.26e-06 3.35e-06 1.8e-06 5.31e-06 1.23e-06 1.92e-06 1.5e-06 4.28e-06 4.04e-06 2.13e-06 5.09e-07 5.88e-07 1.68e-06 1.73e-06 8.95e-07 9.25e-07 4.71e-07 1.32e-06 3.77e-07 1.96e-07 4.71e-06 6.52e-07 1.64e-07 3.27e-07 3.38e-07 8.96e-07 2.49e-07 1.59e-07
ENSG00000259943 AL050341.2 -36340 1.48e-05 1.93e-05 2.95e-06 1.03e-05 3.02e-06 6.82e-06 2.56e-05 2.58e-06 1.74e-05 8.48e-06 2.18e-05 8.22e-06 3.19e-05 7.58e-06 5.09e-06 9.83e-06 8.88e-06 1.4e-05 5.1e-06 4.17e-06 7.92e-06 1.71e-05 1.77e-05 5.15e-06 2.96e-05 5e-06 7.98e-06 7.64e-06 1.98e-05 1.67e-05 1.23e-05 1.26e-06 1.55e-06 4.2e-06 6.68e-06 3.76e-06 1.72e-06 2.33e-06 2.99e-06 1.76e-06 1.28e-06 2.39e-05 1.87e-06 2.96e-07 1.27e-06 2.52e-06 2.42e-06 8.27e-07 6.24e-07
ENSG00000261798 \N 432651 1.2e-06 9.33e-07 3.45e-07 1.02e-06 2.76e-07 5.26e-07 1.53e-06 3.22e-07 1.41e-06 5.06e-07 1.5e-06 7e-07 2.34e-06 2.87e-07 4.98e-07 8.28e-07 7.74e-07 7.19e-07 6.08e-07 6.25e-07 5.47e-07 1.63e-06 8.53e-07 6.02e-07 2.21e-06 3.87e-07 8.75e-07 6.83e-07 1.59e-06 1.21e-06 7.05e-07 6.15e-08 2.31e-07 6.95e-07 5.36e-07 4.09e-07 4.61e-07 2.29e-07 3.25e-07 9.67e-09 1.93e-07 1.5e-06 5.73e-08 1.98e-07 1.7e-07 1.29e-07 1.93e-07 8.31e-08 8.28e-08