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Genes within 1Mb (chr1:40221321:GA:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 337810 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -96492 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -470327 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -123529 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 529139 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -36915 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 644531 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 529836 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 59934 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -310252 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 181088 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 123594 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -287420 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -758367 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -641042 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -228781 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -255969 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -36646 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -470745 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 337810 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -470327 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -123529 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 529139 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -36915 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 644531 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 432456 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 59934 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -310252 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 181088 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 123594 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -287420 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -758367 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -641042 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -255969 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -36646 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -470745 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 337810 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -96492 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -470327 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -123529 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 529139 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -36915 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 644531 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 432456 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 59934 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -310252 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 181088 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 123594 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -287420 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -758367 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -641042 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -255969 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 449973 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -36646 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -470745 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 337810 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -470327 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -123529 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 529139 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -36915 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 644531 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 432456 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 59934 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -310252 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 181088 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 123594 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -287420 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 266209 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -758367 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -641042 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -228781 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -255969 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 449973 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -36646 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -470745 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -36915 4.16e-05 3.82e-05 4.24e-06 1.56e-05 3.78e-06 1.15e-05 3.93e-05 3.51e-06 2.88e-05 1.34e-05 3.19e-05 1.5e-05 4.26e-05 1.35e-05 6.78e-06 1.59e-05 1.44e-05 2.35e-05 5.69e-06 5.18e-06 1.15e-05 3.08e-05 2.47e-05 7.45e-06 3.83e-05 6.84e-06 1.18e-05 1.12e-05 2.54e-05 1.93e-05 1.66e-05 1.58e-06 2.21e-06 6.01e-06 9.74e-06 4.07e-06 2.82e-06 2.74e-06 4.29e-06 3.08e-06 1.55e-06 3.66e-05 2.83e-06 2.85e-07 2.11e-06 3.07e-06 3.64e-06 1.29e-06 1.12e-06
ENSG00000117000 \N 59934 3.22e-05 3.51e-05 3.05e-06 1.48e-05 2.98e-06 8.94e-06 3.18e-05 2.74e-06 2.39e-05 1.03e-05 2.71e-05 1.14e-05 3.85e-05 1.08e-05 5.99e-06 1.32e-05 1.22e-05 1.88e-05 4.12e-06 4.12e-06 9.2e-06 2.55e-05 2e-05 5.93e-06 3.2e-05 5.98e-06 8.89e-06 8.42e-06 2.03e-05 1.64e-05 1.35e-05 1.65e-06 1.74e-06 4.85e-06 8.76e-06 3.58e-06 2.56e-06 2.61e-06 3.46e-06 2.79e-06 1.12e-06 3.22e-05 2.67e-06 2.62e-07 1.78e-06 2.69e-06 2.9e-06 1.17e-06 1.03e-06
ENSG00000117016 \N -444361 1.93e-06 2.53e-06 4.93e-07 3.57e-06 4.61e-07 8.24e-07 1.61e-06 3.49e-07 2.38e-06 1.13e-06 2.38e-06 1.49e-06 6.39e-06 1.4e-06 9.01e-07 1.22e-06 1.03e-06 2.31e-06 8.1e-07 1.39e-06 8.12e-07 2.87e-06 1.86e-06 1.08e-06 3.08e-06 1.08e-06 1.04e-06 1.39e-06 1.74e-06 1.65e-06 1.08e-06 4.71e-07 3.71e-07 1.74e-06 1.73e-06 9.75e-07 1.06e-06 4.38e-07 8.03e-07 6.06e-07 3.4e-07 2.84e-06 5.93e-07 1.79e-07 3.17e-07 1.07e-06 2.71e-07 2.07e-07 3.41e-07
ENSG00000131238 \N 123594 1.31e-05 1.76e-05 1.9e-06 1.04e-05 2.34e-06 5.13e-06 1.55e-05 1.69e-06 1.54e-05 6.24e-06 1.49e-05 7.55e-06 2.41e-05 5.14e-06 4.91e-06 8.56e-06 5.51e-06 9.78e-06 2.93e-06 2.77e-06 6.27e-06 1.31e-05 1.07e-05 3.41e-06 1.93e-05 4.31e-06 6.33e-06 4.59e-06 1.16e-05 8.96e-06 7.4e-06 1.04e-06 1.26e-06 3.52e-06 5.63e-06 2.59e-06 1.72e-06 1.95e-06 2e-06 1.23e-06 7.64e-07 1.51e-05 2.34e-06 1.67e-07 7.64e-07 2.33e-06 1.06e-06 8.5e-07 6.76e-07
ENSG00000187801 \N -228786 5.65e-06 9.23e-06 7.17e-07 5.52e-06 1.48e-06 1.59e-06 8.39e-06 1.01e-06 7.74e-06 3.58e-06 8.01e-06 4.98e-06 1.18e-05 3.9e-06 2.45e-06 4.51e-06 1.74e-06 3.8e-06 1.62e-06 2.07e-06 2.82e-06 7.69e-06 4.84e-06 1.97e-06 9.11e-06 2.01e-06 2.39e-06 1.78e-06 4.47e-06 4.47e-06 2.59e-06 5.42e-07 5.91e-07 2.97e-06 2.59e-06 1.7e-06 1.76e-06 4.7e-07 9.07e-07 8.57e-07 1.83e-07 7.03e-06 1.38e-06 1.84e-07 4.33e-07 1.75e-06 6.79e-07 6.95e-07 4.54e-07
ENSG00000259943 \N -36646 4.16e-05 3.82e-05 4.28e-06 1.56e-05 3.82e-06 1.15e-05 3.93e-05 3.51e-06 2.88e-05 1.36e-05 3.19e-05 1.5e-05 4.26e-05 1.35e-05 6.78e-06 1.59e-05 1.44e-05 2.37e-05 5.69e-06 5.18e-06 1.15e-05 3.08e-05 2.47e-05 7.45e-06 3.83e-05 6.84e-06 1.18e-05 1.12e-05 2.54e-05 1.93e-05 1.66e-05 1.58e-06 2.21e-06 6.01e-06 9.74e-06 4.06e-06 2.82e-06 2.72e-06 4.29e-06 3.08e-06 1.55e-06 3.66e-05 2.83e-06 2.86e-07 2.11e-06 3.07e-06 3.64e-06 1.29e-06 1.1e-06
ENSG00000261798 \N 432345 1.87e-06 2.57e-06 5.75e-07 3.36e-06 4.74e-07 8.62e-07 1.82e-06 3.52e-07 2.42e-06 1.19e-06 2.5e-06 1.68e-06 6.51e-06 1.36e-06 9.21e-07 1.21e-06 1.01e-06 2.2e-06 9.83e-07 1.17e-06 9.45e-07 3.02e-06 2.11e-06 9.91e-07 3.45e-06 1.19e-06 1.12e-06 1.44e-06 1.62e-06 1.67e-06 1.19e-06 4.56e-07 3.79e-07 1.83e-06 1.74e-06 8.93e-07 1.04e-06 4.29e-07 9.3e-07 6.04e-07 3.56e-07 2.98e-06 6.38e-07 1.8e-07 3.71e-07 1.1e-06 3.01e-07 2.38e-07 3.73e-07