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Genes within 1Mb (chr1:40219383:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 335872 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -98430 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -472265 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -125467 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 527201 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -38853 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 642593 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 527898 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 57996 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -312190 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 179150 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 121656 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -289358 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -760305 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -642980 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -230719 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -257907 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -38584 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -472683 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 335872 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -472265 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -125467 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 527201 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -38853 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 642593 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 430518 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 57996 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -312190 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 179150 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 121656 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -289358 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -760305 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -642980 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -257907 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -38584 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -472683 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 335872 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -98430 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -472265 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -125467 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 527201 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -38853 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 642593 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 430518 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 57996 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -312190 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 179150 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 121656 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -289358 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -760305 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -642980 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -257907 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 448035 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -38584 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -472683 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 335872 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -472265 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -125467 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 527201 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -38853 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 642593 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 430518 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 57996 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -312190 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 179150 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 121656 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -289358 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 264271 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -760305 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -642980 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -230719 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -257907 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 448035 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -38584 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -472683 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -472306 eQTL 0.0412 -0.0427 0.0209 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 527898 eQTL 0.0269 -0.0753 0.034 0.0 0.0 0.0486
ENSG00000117000 RLF 57996 eQTL 1.95e-14 0.201 0.0258 0.00419 0.00398 0.0486
ENSG00000117013 KCNQ4 -564404 eQTL 8.28e-03 -0.214 0.081 0.0 0.0 0.0486
ENSG00000131238 PPT1 121656 eQTL 1.36e-27 0.707 0.0629 0.0 0.0 0.0486
ENSG00000164002 EXO5 -289358 eQTL 9.23e-03 -0.129 0.0493 0.0 0.0 0.0486
ENSG00000187801 ZFP69B -230724 eQTL 0.0478 -0.123 0.0623 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -38584 eQTL 3.06e-08 -0.25 0.0448 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -38853 1.73e-05 2.22e-05 4.26e-06 1.27e-05 4.08e-06 9.84e-06 2.73e-05 4.44e-06 2.03e-05 1.13e-05 2.83e-05 1.07e-05 3.66e-05 8.95e-06 5.71e-06 1.22e-05 1.07e-05 1.87e-05 6.52e-06 5.81e-06 1.09e-05 2.18e-05 2.11e-05 6.81e-06 3.2e-05 6.35e-06 1.02e-05 9.46e-06 2.39e-05 1.71e-05 1.38e-05 1.65e-06 2.39e-06 6.43e-06 9.01e-06 4.55e-06 2.6e-06 3.05e-06 3.62e-06 3.01e-06 1.72e-06 2.52e-05 2.67e-06 3.62e-07 2.1e-06 3.54e-06 3.74e-06 1.49e-06 1.57e-06
ENSG00000117000 RLF 57996 1.41e-05 1.62e-05 3.03e-06 9.91e-06 3.16e-06 7.21e-06 2.08e-05 3.74e-06 1.66e-05 8.97e-06 2.13e-05 8.28e-06 2.86e-05 6.13e-06 5.14e-06 9.99e-06 8.09e-06 1.46e-05 4.82e-06 4.88e-06 8.58e-06 1.6e-05 1.58e-05 5.15e-06 2.63e-05 5.34e-06 8.05e-06 7.92e-06 1.79e-05 1.33e-05 1.18e-05 1.23e-06 1.89e-06 5.08e-06 7.28e-06 4.14e-06 1.95e-06 2.74e-06 3.01e-06 2.42e-06 1.69e-06 1.89e-05 2.56e-06 3.43e-07 1.98e-06 2.87e-06 3.24e-06 1.5e-06 1.37e-06
ENSG00000117016 \N -446299 1.28e-06 1.07e-06 2.16e-07 1.23e-06 3.92e-07 6.36e-07 1.6e-06 3.99e-07 1.4e-06 5.86e-07 1.85e-06 8.67e-07 2.34e-06 2.92e-07 4.58e-07 9.85e-07 9e-07 8.27e-07 7.08e-07 5.01e-07 7.61e-07 1.72e-06 8.66e-07 5.61e-07 2.23e-06 6.73e-07 1e-06 8.92e-07 1.31e-06 1.36e-06 8.06e-07 2.42e-07 2.86e-07 6.61e-07 5.64e-07 5.15e-07 7.09e-07 3.42e-07 4.97e-07 2.93e-07 2.79e-07 1.52e-06 3.48e-07 9.61e-08 3.6e-07 3.28e-07 2.43e-07 1.97e-07 2.71e-07
ENSG00000131238 PPT1 121656 7.8e-06 9.42e-06 1.44e-06 5.34e-06 2.42e-06 4e-06 9.8e-06 2.19e-06 9.21e-06 5.42e-06 1.23e-05 5.28e-06 1.34e-05 3.95e-06 2.98e-06 6.41e-06 4.04e-06 7.17e-06 2.68e-06 2.84e-06 5.71e-06 8.93e-06 7.17e-06 3.32e-06 1.29e-05 4.44e-06 5.83e-06 4.58e-06 9.94e-06 7.73e-06 5.48e-06 1.07e-06 1.17e-06 3.29e-06 4.48e-06 2.66e-06 1.76e-06 1.93e-06 1.89e-06 9.9e-07 9.41e-07 1.07e-05 1.49e-06 2.22e-07 9.2e-07 1.85e-06 1.74e-06 6.58e-07 5.7e-07
ENSG00000187801 ZFP69B -230724 4.36e-06 4.77e-06 7.29e-07 2.73e-06 1.57e-06 1.33e-06 3.02e-06 1.1e-06 4.99e-06 2.44e-06 5.18e-06 3.37e-06 7.58e-06 2.16e-06 1.31e-06 3.58e-06 1.98e-06 3.18e-06 1.57e-06 1.15e-06 3.02e-06 4.67e-06 3.49e-06 1.39e-06 5.24e-06 1.85e-06 2.33e-06 1.83e-06 4.24e-06 3.42e-06 2.81e-06 4.18e-07 4.63e-07 1.6e-06 2.22e-06 1.16e-06 9.28e-07 4.72e-07 1.06e-06 5.21e-07 5.82e-07 4.71e-06 4.19e-07 1.55e-07 7.12e-07 1.1e-06 1.05e-06 6.86e-07 6.13e-07
ENSG00000259943 AL050341.2 -38584 1.73e-05 2.22e-05 4.26e-06 1.27e-05 4.08e-06 9.84e-06 2.73e-05 4.44e-06 2.03e-05 1.13e-05 2.83e-05 1.08e-05 3.66e-05 8.95e-06 5.71e-06 1.22e-05 1.07e-05 1.88e-05 6.52e-06 5.81e-06 1.11e-05 2.18e-05 2.11e-05 6.81e-06 3.21e-05 6.4e-06 1.02e-05 9.63e-06 2.39e-05 1.73e-05 1.39e-05 1.65e-06 2.38e-06 6.43e-06 9.01e-06 4.58e-06 2.6e-06 3.05e-06 3.62e-06 3.01e-06 1.72e-06 2.52e-05 2.67e-06 3.62e-07 2.12e-06 3.54e-06 3.74e-06 1.49e-06 1.57e-06
ENSG00000261798 \N 430407 1.29e-06 1.19e-06 2.85e-07 1.32e-06 4.48e-07 5.83e-07 1.59e-06 4.23e-07 1.66e-06 6.69e-07 1.99e-06 9.12e-07 2.46e-06 2.77e-07 4.14e-07 9.92e-07 9.26e-07 9.7e-07 5.81e-07 4.63e-07 7.61e-07 1.93e-06 8.89e-07 5.3e-07 2.22e-06 7.64e-07 9.78e-07 8.4e-07 1.48e-06 1.28e-06 8.1e-07 2.65e-07 3e-07 6.27e-07 6.11e-07 5.22e-07 6.79e-07 3.43e-07 4.67e-07 2.44e-07 2.71e-07 1.53e-06 3.37e-07 1.06e-07 3.83e-07 3.28e-07 2.28e-07 2.53e-07 2.83e-07