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Genes within 1Mb (chr1:40218990:TTAAGTA:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 335479 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -98823 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -472658 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -125860 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 526808 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -39246 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 642200 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 527505 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 57603 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -312583 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 178757 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 121263 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -289751 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -760698 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -643373 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -231112 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -258300 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -38977 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -473076 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 335479 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -472658 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -125860 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 526808 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -39246 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 642200 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 430125 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 57603 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -312583 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 178757 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 121263 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -289751 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -760698 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -643373 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -258300 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -38977 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -473076 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 335479 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -98823 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -472658 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -125860 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 526808 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -39246 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 642200 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 430125 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 57603 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -312583 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 178757 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 121263 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -289751 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -760698 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -643373 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -258300 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 447642 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -38977 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -473076 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 335479 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -472658 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -125860 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 526808 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -39246 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 642200 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 430125 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 57603 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -312583 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 178757 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 121263 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -289751 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 263878 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -760698 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -643373 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -231112 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -258300 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 447642 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -38977 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -473076 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -472699 eQTL 0.0446 -0.0419 0.0208 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 527505 eQTL 0.0266 -0.0753 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 57603 eQTL 2.24e-14 0.2 0.0258 0.00362 0.00344 0.0486
ENSG00000117013 KCNQ4 -564797 eQTL 8.35e-03 -0.213 0.0807 0.0 0.0 0.0486
ENSG00000131238 PPT1 121263 eQTL 1.44e-27 0.704 0.0627 0.0 0.0 0.0486
ENSG00000164002 EXO5 -289751 eQTL 9.67e-03 -0.127 0.0491 0.0 0.0 0.0486
ENSG00000187801 ZFP69B -231117 eQTL 0.0499 -0.122 0.0621 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -38977 eQTL 3.29e-08 -0.249 0.0447 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -39246 0.000196 0.000203 3.11e-05 7.57e-05 3.67e-05 7.31e-05 0.000192 2.85e-05 0.000184 0.000102 0.000231 9.38e-05 0.000272 7.56e-05 3.8e-05 0.000151 8.32e-05 0.000136 5.24e-05 4.04e-05 9.41e-05 0.000233 0.000171 6.18e-05 0.000244 5.68e-05 0.000105 7.3e-05 0.000169 7.82e-05 0.000113 1.07e-05 1.95e-05 4.49e-05 3.72e-05 2.73e-05 1.64e-05 1.54e-05 2.93e-05 1.32e-05 8.07e-06 0.000218 2.14e-05 1.27e-06 1.35e-05 2.3e-05 2.32e-05 9.74e-06 1e-05
ENSG00000117000 RLF 57603 0.000187 0.000185 2.84e-05 6.72e-05 3.24e-05 6.55e-05 0.000177 2.54e-05 0.000168 9.11e-05 0.00021 8.33e-05 0.000248 6.88e-05 3.44e-05 0.000137 7.71e-05 0.000121 4.65e-05 3.55e-05 8.57e-05 0.000212 0.000162 5.38e-05 0.000223 5.06e-05 9.58e-05 6.66e-05 0.000155 7.51e-05 0.000101 8.88e-06 1.57e-05 3.93e-05 3.3e-05 2.51e-05 1.31e-05 1.42e-05 2.41e-05 1.2e-05 6.25e-06 0.000202 2.06e-05 1.19e-06 1.21e-05 2.02e-05 2.14e-05 8.78e-06 9.06e-06
ENSG00000117016 \N -446692 4.68e-06 6.19e-06 6.35e-07 3.18e-06 1.66e-06 1.55e-06 6.29e-06 8.5e-07 4.22e-06 2.35e-06 5.32e-06 3.34e-06 7.06e-06 1.75e-06 1.02e-06 2.56e-06 3.19e-06 3.85e-06 1.48e-06 1.21e-06 2.88e-06 5.51e-06 3.47e-06 1.39e-06 8.15e-06 1.74e-06 1.63e-06 1.79e-06 4.21e-06 4.25e-06 2.25e-06 2.82e-07 6.32e-07 2.53e-06 2.07e-06 1.56e-06 9.08e-07 4.74e-07 1.06e-06 4.18e-07 2.96e-07 5.32e-06 2.47e-06 3.63e-07 3.58e-07 1.25e-06 1.05e-06 7.35e-07 3.41e-07
ENSG00000131238 PPT1 121263 0.00016 0.000132 1.87e-05 4.45e-05 2.11e-05 4.68e-05 0.000129 1.68e-05 0.000118 6.16e-05 0.000153 5.65e-05 0.000175 5.12e-05 2.28e-05 9.28e-05 5.78e-05 9.19e-05 3.11e-05 2.35e-05 5.35e-05 0.000152 0.000115 3.54e-05 0.000154 3.55e-05 6.31e-05 4.68e-05 0.000113 5.46e-05 6.91e-05 5.77e-06 1.08e-05 2.54e-05 2.38e-05 1.75e-05 8.21e-06 1.01e-05 1.61e-05 9.18e-06 3.21e-06 0.000138 1.62e-05 7.5e-07 7.83e-06 1.47e-05 1.48e-05 6.01e-06 5.61e-06
ENSG00000187801 ZFP69B -231117 6.95e-05 4.33e-05 6.78e-06 2.04e-05 6.98e-06 1.45e-05 4.85e-05 3.78e-06 3.87e-05 1.56e-05 5.53e-05 1.78e-05 6.99e-05 1.6e-05 6.84e-06 2.6e-05 1.92e-05 3.18e-05 9.5e-06 9.06e-06 1.95e-05 6.04e-05 3.42e-05 1.27e-05 5.57e-05 9.39e-06 1.47e-05 1.28e-05 3.6e-05 2.1e-05 2.25e-05 1.64e-06 3.49e-06 1.24e-05 1.08e-05 8.63e-06 3.69e-06 3.2e-06 6.54e-06 4.19e-06 1.86e-06 5.11e-05 1.3e-05 6.6e-07 3.38e-06 6.26e-06 5.63e-06 2.02e-06 1.49e-06
ENSG00000259943 AL050341.2 -38977 0.000196 0.000203 3.11e-05 7.57e-05 3.67e-05 7.31e-05 0.000192 2.85e-05 0.000184 0.000102 0.000231 9.38e-05 0.000272 7.56e-05 3.8e-05 0.000151 8.32e-05 0.000136 5.24e-05 4.13e-05 9.57e-05 0.000233 0.000173 6.18e-05 0.000244 5.68e-05 0.000105 7.3e-05 0.000169 7.82e-05 0.000114 1.07e-05 1.95e-05 4.49e-05 3.72e-05 2.73e-05 1.64e-05 1.54e-05 2.93e-05 1.35e-05 8.07e-06 0.000218 2.14e-05 1.27e-06 1.35e-05 2.3e-05 2.32e-05 9.74e-06 1e-05
ENSG00000261798 \N 430014 4.78e-06 7.72e-06 9.56e-07 3.5e-06 1.5e-06 1.59e-06 7.75e-06 1.01e-06 5.16e-06 2.5e-06 6.53e-06 3.25e-06 7.67e-06 2.17e-06 9.41e-07 3.3e-06 3.72e-06 3.8e-06 1.5e-06 9.15e-07 2.71e-06 6.99e-06 4.13e-06 1.62e-06 8.96e-06 1.9e-06 2e-06 1.49e-06 4.51e-06 4.99e-06 2.83e-06 3.02e-07 5.05e-07 2.79e-06 2.04e-06 2.11e-06 9.38e-07 4.51e-07 8.12e-07 4.11e-07 3.56e-07 5.76e-06 2.64e-06 4.09e-07 5.95e-07 1.63e-06 1.16e-06 6.82e-07 3.29e-07