logo

Genes within 1Mb (chr1:40217570:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 334059 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -100243 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -474078 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -127280 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 525388 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -40666 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 640780 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 526085 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 56183 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -314003 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 177337 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 119843 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -291171 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -762118 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -644793 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -232532 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -259720 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -40397 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -474496 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 334059 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -474078 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -127280 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 525388 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -40666 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 640780 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 428705 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 56183 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -314003 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 177337 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 119843 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -291171 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -762118 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -644793 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -259720 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -40397 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -474496 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 334059 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -100243 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -474078 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -127280 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 525388 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -40666 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 640780 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 428705 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 56183 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -314003 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 177337 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 119843 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -291171 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -762118 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -644793 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -259720 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 446222 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -40397 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -474496 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 334059 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -474078 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -127280 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 525388 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -40666 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 640780 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 428705 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 56183 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -314003 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 177337 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 119843 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -291171 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 262458 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -762118 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -644793 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -232532 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -259720 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 446222 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -40397 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -474496 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -474119 eQTL 0.0325 -0.0443 0.0207 0.00118 0.0 0.0496
ENSG00000116983 HPCAL4 526085 eQTL 0.0263 -0.0748 0.0336 0.0 0.0 0.0496
ENSG00000117000 RLF 56183 eQTL 4.00e-15 0.204 0.0255 0.0226 0.0197 0.0496
ENSG00000117013 KCNQ4 -566217 eQTL 1.35e-02 -0.198 0.0801 0.0 0.0 0.0496
ENSG00000131238 PPT1 119843 eQTL 1.08e-26 0.688 0.0624 0.0 0.0 0.0496
ENSG00000164002 EXO5 -291171 eQTL 1.17e-02 -0.123 0.0488 0.0 0.0 0.0496
ENSG00000259943 AL050341.2 -40397 eQTL 1.05e-07 -0.238 0.0444 0.0 0.0 0.0496

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -40666 1e-05 9.99e-06 1.56e-06 6.21e-06 2.53e-06 4.71e-06 1.17e-05 2.14e-06 9.55e-06 5.31e-06 1.24e-05 5.63e-06 1.59e-05 3.53e-06 3.01e-06 6.57e-06 5.03e-06 7.92e-06 2.72e-06 2.89e-06 5.94e-06 1e-05 9.02e-06 3.39e-06 1.57e-05 4.56e-06 4.93e-06 3.98e-06 1.13e-05 1.07e-05 5.54e-06 1e-06 1.17e-06 3.54e-06 4.55e-06 2.69e-06 1.83e-06 1.96e-06 2.11e-06 1.03e-06 9.34e-07 1.37e-05 1.38e-06 1.92e-07 8.44e-07 1.81e-06 1.82e-06 7.13e-07 4.66e-07
ENSG00000117000 RLF 56183 7.77e-06 9.04e-06 1.31e-06 4.2e-06 2.1e-06 3.65e-06 9.57e-06 1.5e-06 5.94e-06 4.1e-06 9.01e-06 4.23e-06 1.12e-05 3.81e-06 1.81e-06 5.65e-06 3.77e-06 5e-06 2.3e-06 2.65e-06 3.97e-06 7.55e-06 6.71e-06 2.8e-06 1.18e-05 2.79e-06 3.99e-06 2.51e-06 7.5e-06 7.81e-06 4.1e-06 6.75e-07 9.22e-07 2.86e-06 2.88e-06 2.1e-06 1.44e-06 1.42e-06 1.63e-06 9.87e-07 9.12e-07 1.04e-05 1.14e-06 1.56e-07 8.02e-07 1.25e-06 1.02e-06 6.25e-07 5.79e-07
ENSG00000117016 \N -448112 8.25e-07 4.24e-07 8.55e-08 3.58e-07 9.93e-08 1.71e-07 5.01e-07 8.86e-08 2.81e-07 1.7e-07 4.39e-07 2.8e-07 6.08e-07 1.07e-07 1.45e-07 1.76e-07 1.69e-07 3.39e-07 1.5e-07 1.17e-07 1.59e-07 2.86e-07 3.03e-07 1.17e-07 6.02e-07 2.29e-07 2.08e-07 2.01e-07 2.98e-07 3.8e-07 2e-07 6.58e-08 5.41e-08 1.21e-07 2.32e-07 5.32e-08 7.74e-08 5.8e-08 6.08e-08 7.28e-08 6.31e-08 5.09e-07 2.62e-08 1.58e-08 9.15e-08 9.49e-09 9.52e-08 0.0 4.68e-08
ENSG00000131238 PPT1 119843 4.25e-06 3.74e-06 4.93e-07 2.02e-06 8.52e-07 9.68e-07 2.79e-06 8.99e-07 2.51e-06 1.43e-06 3.22e-06 1.91e-06 5.56e-06 1.25e-06 1e-06 2.06e-06 1.59e-06 2.26e-06 1.48e-06 9.54e-07 1.43e-06 3.5e-06 3.3e-06 1.82e-06 4.66e-06 1.19e-06 1.63e-06 1.71e-06 3.81e-06 3.41e-06 1.97e-06 3.82e-07 6.26e-07 1.59e-06 1.82e-06 9.75e-07 8.92e-07 4.23e-07 1.31e-06 3.46e-07 2.08e-07 4.71e-06 5.41e-07 1.96e-07 3.63e-07 3.64e-07 8.59e-07 2.33e-07 1.56e-07
ENSG00000187801 \N -232537 1.4e-06 1.07e-06 3.49e-07 1.17e-06 3.36e-07 5.87e-07 1.51e-06 3.62e-07 1.5e-06 4.65e-07 1.84e-06 7.32e-07 2.51e-06 2.87e-07 5.62e-07 9.27e-07 8.94e-07 7.89e-07 8.48e-07 6.19e-07 6.12e-07 1.72e-06 9.35e-07 5.66e-07 2.23e-06 5.53e-07 9.15e-07 7.19e-07 1.48e-06 1.2e-06 6.78e-07 1.55e-07 2.19e-07 6.76e-07 5.6e-07 4.5e-07 5.02e-07 1.54e-07 3.78e-07 3.21e-07 2.84e-07 1.8e-06 9.42e-08 4.22e-08 2.11e-07 1.25e-07 2.2e-07 8.31e-08 9.42e-08
ENSG00000259943 AL050341.2 -40397 9.98e-06 9.95e-06 1.56e-06 6.2e-06 2.42e-06 4.65e-06 1.19e-05 2.09e-06 9.59e-06 5.39e-06 1.23e-05 5.61e-06 1.6e-05 3.56e-06 3.14e-06 6.58e-06 5.17e-06 8.11e-06 2.7e-06 2.95e-06 5.84e-06 1.01e-05 9.11e-06 3.36e-06 1.58e-05 4.62e-06 5.04e-06 4.09e-06 1.13e-05 1.08e-05 5.58e-06 1.03e-06 1.2e-06 3.5e-06 4.62e-06 2.79e-06 1.76e-06 1.95e-06 2.08e-06 9.98e-07 9.3e-07 1.39e-05 1.45e-06 1.9e-07 8.66e-07 1.82e-06 1.82e-06 6.85e-07 4.65e-07
ENSG00000261798 \N 428594 8.85e-07 4.93e-07 8.99e-08 3.48e-07 1.07e-07 1.85e-07 5.31e-07 9.69e-08 3.51e-07 2.01e-07 5.29e-07 3.21e-07 7.02e-07 1.1e-07 1.57e-07 2e-07 2.11e-07 3.67e-07 1.62e-07 1.39e-07 1.61e-07 3.15e-07 3.11e-07 1.29e-07 6.87e-07 2.36e-07 2.24e-07 2.24e-07 3.58e-07 4.61e-07 2.31e-07 8.02e-08 5.55e-08 1.19e-07 2.7e-07 6.23e-08 9.11e-08 6.2e-08 4.9e-08 5.8e-08 8.29e-08 6.15e-07 1.21e-08 2.07e-08 1.1e-07 1.37e-08 8.75e-08 0.0 4.74e-08