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Genes within 1Mb (chr1:40213825:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 330314 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -103988 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -477823 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -131025 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 521643 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -44411 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 637035 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 522340 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 52438 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -317748 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 173592 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 116098 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -294916 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -765863 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -648538 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -236277 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -263465 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -44142 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -478241 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 330314 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -477823 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -131025 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 521643 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -44411 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 637035 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 424960 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 52438 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -317748 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 173592 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 116098 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -294916 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -765863 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -648538 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -263465 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -44142 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -478241 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 330314 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -103988 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -477823 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -131025 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 521643 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -44411 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 637035 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 424960 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 52438 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -317748 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 173592 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 116098 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -294916 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -765863 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -648538 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -263465 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 442477 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -44142 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -478241 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 330314 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -477823 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -131025 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 521643 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -44411 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 637035 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 424960 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 52438 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -317748 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 173592 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 116098 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -294916 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 258713 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -765863 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -648538 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -236277 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -263465 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 442477 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -44142 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -478241 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -477864 eQTL 0.0446 -0.0419 0.0208 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 522340 eQTL 0.0266 -0.0753 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 52438 eQTL 2.24e-14 0.2 0.0258 0.00362 0.00343 0.0486
ENSG00000117013 KCNQ4 -569962 eQTL 8.36e-03 -0.213 0.0807 0.0 0.0 0.0486
ENSG00000131238 PPT1 116098 eQTL 1.44e-27 0.704 0.0627 0.0 0.0 0.0486
ENSG00000164002 EXO5 -294916 eQTL 9.67e-03 -0.127 0.0491 0.0 0.0 0.0486
ENSG00000187801 ZFP69B -236282 eQTL 0.0499 -0.122 0.0621 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -44142 eQTL 3.29e-08 -0.249 0.0447 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -44411 1.59e-05 2.06e-05 2.47e-06 9.71e-06 2.45e-06 6.82e-06 2.25e-05 2.93e-06 1.67e-05 7.58e-06 2.13e-05 7.55e-06 3.06e-05 6.43e-06 4.91e-06 9.29e-06 8.14e-06 1.24e-05 4.18e-06 4.08e-06 7.4e-06 1.62e-05 1.57e-05 4.52e-06 2.59e-05 5.1e-06 7.92e-06 7.23e-06 1.73e-05 1.38e-05 1.16e-05 9.49e-07 1.44e-06 3.8e-06 6.34e-06 3.22e-06 1.78e-06 2.37e-06 2.59e-06 2e-06 9.75e-07 2.31e-05 2.39e-06 2.22e-07 1.07e-06 2.36e-06 2e-06 7.24e-07 6.24e-07
ENSG00000117000 RLF 52438 1.48e-05 1.84e-05 2.57e-06 8.87e-06 2.42e-06 6.2e-06 2.04e-05 2.53e-06 1.54e-05 6.93e-06 1.99e-05 6.75e-06 2.75e-05 5.53e-06 4.35e-06 9.06e-06 7.73e-06 1.18e-05 3.84e-06 3.53e-06 6.92e-06 1.4e-05 1.36e-05 3.88e-06 2.41e-05 4.45e-06 7.65e-06 6.25e-06 1.6e-05 1.21e-05 1.04e-05 1.08e-06 1.31e-06 3.64e-06 5.86e-06 2.85e-06 1.77e-06 2.11e-06 2.22e-06 1.69e-06 1.02e-06 2.02e-05 2.21e-06 2.03e-07 9.58e-07 2.08e-06 1.79e-06 6.85e-07 5.4e-07
ENSG00000117016 \N -451857 7.57e-07 5.18e-07 8.55e-08 3.62e-07 1.07e-07 1.74e-07 4.25e-07 1.09e-07 2.81e-07 1.78e-07 6.39e-07 2.49e-07 6.08e-07 1.1e-07 1.18e-07 1.53e-07 2.34e-07 3.56e-07 1.89e-07 7.29e-08 1.92e-07 3.1e-07 2.77e-07 1.04e-07 4.67e-07 2.07e-07 1.85e-07 1.88e-07 2.19e-07 3.93e-07 2.54e-07 7.71e-08 5.73e-08 1.17e-07 1.54e-07 7.57e-08 1.1e-07 7.86e-08 5.4e-08 8.03e-08 5.28e-08 3.27e-07 6.24e-08 5.54e-09 8.59e-08 1.78e-08 7.66e-08 0.0 6.23e-08
ENSG00000131238 PPT1 116098 7.22e-06 9.5e-06 8.29e-07 4e-06 1.76e-06 2.67e-06 9.34e-06 1.51e-06 6.39e-06 4.1e-06 1.04e-05 3.71e-06 1.14e-05 3.41e-06 1.54e-06 4.87e-06 3.69e-06 3.89e-06 2.19e-06 2e-06 3.46e-06 7.46e-06 5.56e-06 2.06e-06 9.79e-06 2.21e-06 3.73e-06 2.62e-06 6.87e-06 6.77e-06 4.32e-06 5.55e-07 7.99e-07 2.15e-06 2.35e-06 1.53e-06 1.1e-06 7.41e-07 1.05e-06 8.28e-07 3.75e-07 9.36e-06 1.28e-06 1.67e-07 7.75e-07 9.29e-07 1.12e-06 6.58e-07 5.59e-07
ENSG00000187801 ZFP69B -236282 1.94e-06 2.53e-06 2.85e-07 1.58e-06 4.83e-07 7.28e-07 1.3e-06 4.97e-07 1.7e-06 6.73e-07 2.12e-06 1.29e-06 3.04e-06 8.7e-07 3.34e-07 1.04e-06 1.03e-06 1.36e-06 6.47e-07 5.67e-07 7.87e-07 2.06e-06 1.61e-06 8.04e-07 2.44e-06 8.82e-07 1.04e-06 1.04e-06 1.67e-06 1.59e-06 1.08e-06 2.86e-07 3.78e-07 5.5e-07 6.99e-07 6.23e-07 6.89e-07 3.65e-07 5.19e-07 2.04e-07 2.36e-07 2.45e-06 6.49e-07 1.89e-07 3.79e-07 3.36e-07 2.3e-07 1.49e-07 1.55e-07
ENSG00000259943 AL050341.2 -44142 1.59e-05 2.1e-05 2.47e-06 9.71e-06 2.45e-06 6.82e-06 2.25e-05 2.99e-06 1.67e-05 7.65e-06 2.15e-05 7.55e-06 3.06e-05 6.49e-06 4.93e-06 9.29e-06 8.14e-06 1.25e-05 4.21e-06 4.08e-06 7.43e-06 1.62e-05 1.57e-05 4.52e-06 2.61e-05 5.1e-06 7.98e-06 7.23e-06 1.73e-05 1.38e-05 1.16e-05 9.49e-07 1.4e-06 3.8e-06 6.38e-06 3.22e-06 1.79e-06 2.37e-06 2.59e-06 2e-06 9.91e-07 2.33e-05 2.39e-06 2.22e-07 1.09e-06 2.34e-06 2e-06 7.24e-07 6.33e-07
ENSG00000261798 \N 424849 8.35e-07 6.42e-07 1.05e-07 4.08e-07 9.29e-08 2.12e-07 5.2e-07 1.48e-07 3.94e-07 2.16e-07 8.58e-07 3.3e-07 7.71e-07 1.41e-07 1.51e-07 1.96e-07 3.63e-07 3.95e-07 2.51e-07 9.17e-08 2.3e-07 3.87e-07 3.11e-07 1.29e-07 6.59e-07 2.36e-07 2.43e-07 2.44e-07 2.84e-07 5.36e-07 3.43e-07 5.99e-08 5.19e-08 1.17e-07 2.61e-07 1.36e-07 1.06e-07 8.15e-08 4.04e-08 7.5e-08 5.42e-08 4.35e-07 6.28e-08 1.21e-08 1.08e-07 1.25e-08 9.12e-08 2.99e-09 5.25e-08