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Genes within 1Mb (chr1:40209482:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 325971 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -108331 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -482166 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -135368 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 517300 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -48754 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 632692 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 517997 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 48095 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -322091 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 169249 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 111755 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -299259 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -770206 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -652881 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -240620 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -267808 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -48485 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -482584 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 325971 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -482166 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -135368 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 517300 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -48754 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 632692 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 420617 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 48095 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -322091 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 169249 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 111755 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -299259 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -770206 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -652881 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -267808 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -48485 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -482584 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 325971 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -108331 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -482166 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -135368 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 517300 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -48754 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 632692 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 420617 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 48095 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -322091 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 169249 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 111755 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -299259 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -770206 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -652881 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -267808 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 438134 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -48485 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -482584 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 325971 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -482166 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -135368 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 517300 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -48754 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 632692 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 420617 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 48095 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -322091 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 169249 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 111755 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -299259 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 254370 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -770206 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -652881 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -240620 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -267808 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 438134 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -48485 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -482584 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -482207 eQTL 0.0442 -0.0421 0.0209 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 517997 eQTL 0.0274 -0.075 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 48095 eQTL 2.06e-14 0.201 0.0258 0.00394 0.00374 0.0486
ENSG00000117013 KCNQ4 -574305 eQTL 8.01e-03 -0.215 0.0809 0.0 0.0 0.0486
ENSG00000131238 PPT1 111755 eQTL 9.24e-28 0.708 0.0628 0.0 0.0 0.0486
ENSG00000164002 EXO5 -299259 eQTL 9.05e-03 -0.129 0.0492 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -48485 eQTL 3.16e-08 -0.25 0.0448 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -48754 1.11e-05 1.24e-05 1.98e-06 7.18e-06 2.36e-06 5.16e-06 1.33e-05 2.18e-06 1.12e-05 5.9e-06 1.52e-05 6.31e-06 2.07e-05 4.17e-06 3.51e-06 6.93e-06 6.37e-06 9.66e-06 2.95e-06 3.14e-06 6.5e-06 1.11e-05 1.07e-05 3.47e-06 1.83e-05 4.45e-06 6.57e-06 5e-06 1.25e-05 1.02e-05 7.69e-06 9.76e-07 1.22e-06 3.53e-06 5.12e-06 2.88e-06 1.77e-06 2.02e-06 2.05e-06 1.18e-06 9.58e-07 1.6e-05 1.6e-06 1.47e-07 9.39e-07 1.71e-06 1.82e-06 8.34e-07 4.59e-07
ENSG00000117000 RLF 48095 1.1e-05 1.25e-05 1.99e-06 7.23e-06 2.44e-06 5.26e-06 1.37e-05 2.16e-06 1.14e-05 6.03e-06 1.54e-05 6.43e-06 2.09e-05 4.2e-06 3.5e-06 7.09e-06 6.45e-06 9.66e-06 3.14e-06 3.12e-06 6.77e-06 1.14e-05 1.07e-05 3.52e-06 1.87e-05 4.52e-06 6.66e-06 5.08e-06 1.25e-05 1.03e-05 7.73e-06 9.7e-07 1.28e-06 3.5e-06 5.11e-06 2.78e-06 1.8e-06 1.99e-06 1.99e-06 1.19e-06 9.34e-07 1.61e-05 1.61e-06 1.59e-07 9.34e-07 1.72e-06 1.82e-06 8.04e-07 4.7e-07
ENSG00000117016 \N -456200 4.68e-07 3.35e-07 7.76e-08 3.58e-07 1.09e-07 1.54e-07 3.57e-07 8.37e-08 2.56e-07 1.5e-07 3.25e-07 2.04e-07 5.09e-07 9.48e-08 1.12e-07 1.46e-07 1.17e-07 2.93e-07 1.13e-07 8.86e-08 1.91e-07 2.45e-07 2.48e-07 9.01e-08 3.55e-07 2e-07 1.72e-07 1.86e-07 1.98e-07 2.19e-07 1.78e-07 7.49e-08 5.38e-08 1.21e-07 1.69e-07 6.52e-08 8.35e-08 7.75e-08 4.55e-08 5.8e-08 2.95e-08 3.27e-07 1.7e-08 1.62e-08 7.89e-08 9.31e-09 9.38e-08 3.25e-09 5.54e-08
ENSG00000131238 PPT1 111755 4.53e-06 5.09e-06 7.32e-07 3.29e-06 1.62e-06 1.76e-06 4.66e-06 1.05e-06 4.91e-06 2.48e-06 5.75e-06 3.28e-06 7.66e-06 2.04e-06 1.33e-06 3.83e-06 1.84e-06 3.61e-06 1.45e-06 1.18e-06 2.88e-06 4.9e-06 4.57e-06 1.41e-06 6.44e-06 1.85e-06 2.45e-06 1.6e-06 4.53e-06 4.26e-06 2.83e-06 4.37e-07 4.63e-07 1.44e-06 2.09e-06 1.13e-06 1.1e-06 4.57e-07 8.39e-07 4.88e-07 4.63e-07 6.63e-06 4.37e-07 1.67e-07 5.64e-07 7.43e-07 9.33e-07 4.42e-07 3.89e-07
ENSG00000259943 AL050341.2 -48485 1.12e-05 1.25e-05 1.98e-06 7.15e-06 2.4e-06 5.16e-06 1.34e-05 2.2e-06 1.14e-05 5.94e-06 1.54e-05 6.27e-06 2.09e-05 4.19e-06 3.54e-06 7.03e-06 6.45e-06 9.66e-06 3.04e-06 3.12e-06 6.56e-06 1.12e-05 1.07e-05 3.54e-06 1.83e-05 4.42e-06 6.59e-06 5.04e-06 1.25e-05 1.03e-05 7.65e-06 9.86e-07 1.24e-06 3.54e-06 5.12e-06 2.82e-06 1.78e-06 1.99e-06 2.01e-06 1.2e-06 9.34e-07 1.6e-05 1.6e-06 1.59e-07 9.48e-07 1.67e-06 1.82e-06 8.19e-07 4.84e-07