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Genes within 1Mb (chr1:40207389:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 323878 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -110424 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -484259 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -137461 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 515207 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -50847 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 630599 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 515904 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 46002 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -324184 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 167156 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 109662 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -301352 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -772299 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -654974 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -242713 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -269901 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -50578 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -484677 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 323878 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -484259 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -137461 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 515207 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -50847 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 630599 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 418524 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 46002 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -324184 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 167156 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 109662 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -301352 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -772299 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -654974 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -269901 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -50578 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -484677 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 323878 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -110424 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -484259 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -137461 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 515207 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -50847 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 630599 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 418524 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 46002 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -324184 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 167156 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 109662 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -301352 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -772299 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -654974 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -269901 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 436041 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -50578 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -484677 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 323878 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -484259 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -137461 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 515207 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -50847 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 630599 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 418524 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 46002 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -324184 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 167156 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 109662 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -301352 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 252277 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -772299 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -654974 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -242713 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -269901 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 436041 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -50578 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -484677 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -484300 eQTL 0.045 -0.0419 0.0209 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 515904 eQTL 0.027 -0.0752 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 46002 eQTL 2.09e-14 0.2 0.0258 0.00387 0.00367 0.0486
ENSG00000117013 KCNQ4 -576398 eQTL 8.35e-03 -0.214 0.0809 0.0 0.0 0.0486
ENSG00000131238 PPT1 109662 eQTL 1.14e-27 0.707 0.0628 0.0 0.0 0.0486
ENSG00000164002 EXO5 -301352 eQTL 9.35e-03 -0.128 0.0492 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -50578 eQTL 3.5e-08 -0.249 0.0448 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -50847 1.05e-05 1.18e-05 2.49e-06 6.69e-06 2.4e-06 5.45e-06 1.41e-05 2.19e-06 1.07e-05 6.03e-06 1.45e-05 6.09e-06 1.99e-05 3.99e-06 3.62e-06 7.65e-06 6.37e-06 9.83e-06 3.65e-06 3.24e-06 6.47e-06 1.14e-05 1.1e-05 4.21e-06 1.93e-05 4.53e-06 6.74e-06 5.2e-06 1.41e-05 1.18e-05 7.4e-06 9.65e-07 1.48e-06 3.93e-06 4.89e-06 3.35e-06 1.71e-06 2.2e-06 2.25e-06 1.45e-06 1.19e-06 1.48e-05 1.61e-06 3.57e-07 1.44e-06 2.08e-06 2.03e-06 8.83e-07 8.01e-07
ENSG00000117000 RLF 46002 1.11e-05 1.26e-05 2.54e-06 7.15e-06 2.44e-06 5.83e-06 1.65e-05 2.48e-06 1.26e-05 6.27e-06 1.6e-05 6.55e-06 2.24e-05 4.48e-06 3.96e-06 8.62e-06 6.79e-06 1.12e-05 3.77e-06 3.76e-06 6.92e-06 1.24e-05 1.24e-05 4.71e-06 2.14e-05 4.86e-06 7.21e-06 5.45e-06 1.49e-05 1.31e-05 7.81e-06 1.1e-06 1.44e-06 4.03e-06 5.47e-06 3.77e-06 1.79e-06 2.39e-06 2.61e-06 1.89e-06 1.46e-06 1.61e-05 1.84e-06 3.62e-07 1.76e-06 2.35e-06 2.21e-06 1.11e-06 9.96e-07
ENSG00000117016 \N -458293 9.39e-07 5.6e-07 1.59e-07 3.77e-07 1.09e-07 2.08e-07 5.65e-07 1.48e-07 4.74e-07 2.62e-07 7.44e-07 3.73e-07 8.34e-07 1.49e-07 2.48e-07 2.85e-07 3.63e-07 4.22e-07 2.57e-07 1.69e-07 2.17e-07 4.11e-07 3.84e-07 1.76e-07 7.94e-07 2.6e-07 3.16e-07 2.69e-07 4.15e-07 6.47e-07 3.32e-07 6.31e-08 4.49e-08 1.64e-07 3.04e-07 1.61e-07 1.05e-07 8.04e-08 4.55e-08 3.01e-08 5.56e-08 5.52e-07 5.51e-08 1.05e-08 1.94e-07 1.37e-08 1.18e-07 2.25e-08 6.14e-08
ENSG00000131238 PPT1 109662 5.07e-06 5.08e-06 6.33e-07 3.08e-06 1.66e-06 1.54e-06 7.3e-06 1.18e-06 4.88e-06 2.8e-06 6.72e-06 3.22e-06 8.51e-06 1.76e-06 1.04e-06 3.9e-06 2.13e-06 3.84e-06 1.58e-06 1.55e-06 2.84e-06 5.46e-06 4.76e-06 1.91e-06 8.44e-06 2.1e-06 2.55e-06 1.76e-06 5.8e-06 5.44e-06 2.57e-06 4.69e-07 7.88e-07 2.3e-06 2.07e-06 1.55e-06 1e-06 5e-07 9.07e-07 6.18e-07 7.37e-07 7.06e-06 6.63e-07 1.64e-07 7.83e-07 1.1e-06 9.85e-07 6.81e-07 6.04e-07
ENSG00000259943 AL050341.2 -50578 1.07e-05 1.18e-05 2.47e-06 6.69e-06 2.41e-06 5.43e-06 1.41e-05 2.16e-06 1.09e-05 6.03e-06 1.45e-05 6.05e-06 1.99e-05 3.99e-06 3.67e-06 7.69e-06 6.45e-06 9.99e-06 3.64e-06 3.25e-06 6.46e-06 1.14e-05 1.11e-05 4.2e-06 1.95e-05 4.65e-06 6.69e-06 5.24e-06 1.42e-05 1.18e-05 7.59e-06 9.49e-07 1.49e-06 3.89e-06 4.96e-06 3.37e-06 1.71e-06 2.2e-06 2.22e-06 1.5e-06 1.21e-06 1.48e-05 1.63e-06 3.57e-07 1.46e-06 2.08e-06 2.03e-06 8.57e-07 8.01e-07