logo

Genes within 1Mb (chr1:40203566:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 320055 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -114247 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -488082 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -141284 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 511384 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -54670 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 626776 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 512081 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 42179 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -328007 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 163333 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 105839 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -305175 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -776122 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -658797 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -246536 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -273724 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -54401 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -488500 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 320055 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -488082 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -141284 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 511384 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -54670 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 626776 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 414701 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 42179 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -328007 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 163333 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 105839 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -305175 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -776122 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -658797 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -273724 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -54401 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -488500 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 320055 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -114247 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -488082 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -141284 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 511384 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -54670 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 626776 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 414701 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 42179 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -328007 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 163333 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 105839 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -305175 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -776122 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -658797 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -273724 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 432218 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -54401 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -488500 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 320055 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -488082 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -141284 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 511384 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -54670 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 626776 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 414701 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 42179 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -328007 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 163333 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 105839 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -305175 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 248454 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -776122 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -658797 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -246536 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -273724 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 432218 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -54401 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -488500 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -54670 9.84e-06 1e-05 1.67e-06 6.18e-06 2.41e-06 4.65e-06 1.17e-05 2.14e-06 9.81e-06 5.31e-06 1.3e-05 5.8e-06 1.74e-05 3.56e-06 3.46e-06 6.75e-06 5.17e-06 8.19e-06 2.97e-06 3.15e-06 6.31e-06 1.04e-05 9.89e-06 3.81e-06 1.66e-05 4.39e-06 6.02e-06 4.77e-06 1.22e-05 1.02e-05 5.96e-06 1.02e-06 1.21e-06 3.76e-06 4.81e-06 2.82e-06 1.74e-06 1.99e-06 2.22e-06 1.34e-06 1.29e-06 1.29e-05 1.44e-06 2.73e-07 1.07e-06 1.72e-06 1.86e-06 6.88e-07 4.42e-07
ENSG00000117000 \N 42179 1.2e-05 1.26e-05 2.56e-06 7.73e-06 2.57e-06 5.91e-06 1.64e-05 2.46e-06 1.25e-05 6.37e-06 1.64e-05 6.6e-06 2.28e-05 4.48e-06 4.25e-06 8.83e-06 6.94e-06 1.12e-05 3.84e-06 3.85e-06 6.9e-06 1.26e-05 1.3e-05 4.94e-06 2.22e-05 4.96e-06 7.43e-06 5.45e-06 1.47e-05 1.36e-05 7.72e-06 1.12e-06 1.49e-06 4.4e-06 5.87e-06 3.76e-06 1.87e-06 2.39e-06 3.09e-06 2.01e-06 1.67e-06 1.68e-05 1.68e-06 3.59e-07 1.76e-06 2.35e-06 2.46e-06 1.11e-06 8.26e-07
ENSG00000117016 \N -462116 1.01e-06 6.42e-07 1.31e-07 3.95e-07 1.04e-07 2.54e-07 6.06e-07 1.78e-07 6.27e-07 2.87e-07 9e-07 5.01e-07 9.65e-07 1.59e-07 3.13e-07 3.35e-07 4.54e-07 4.16e-07 2.57e-07 1.97e-07 2.52e-07 4.99e-07 4.12e-07 2.39e-07 9.71e-07 2.57e-07 4e-07 3.24e-07 4.63e-07 6.42e-07 3.49e-07 5.77e-08 5.71e-08 1.69e-07 3.52e-07 1.61e-07 8.6e-08 1.09e-07 7.63e-08 2.28e-08 1.02e-07 6.11e-07 4.36e-08 1.8e-08 1.47e-07 1.44e-08 1.27e-07 2.31e-08 5.86e-08
ENSG00000131238 \N 105839 5.03e-06 5.32e-06 6.4e-07 3.42e-06 1.72e-06 1.55e-06 7.3e-06 1.22e-06 4.59e-06 2.84e-06 6.77e-06 2.97e-06 9.33e-06 1.79e-06 9.3e-07 4.07e-06 2.24e-06 3.99e-06 1.58e-06 1.68e-06 2.74e-06 5.54e-06 4.8e-06 1.95e-06 8.55e-06 2.11e-06 2.79e-06 1.73e-06 5.66e-06 5.37e-06 2.59e-06 4.97e-07 8.08e-07 2.61e-06 1.89e-06 1.55e-06 1.14e-06 4.99e-07 1.38e-06 7.37e-07 8.59e-07 7.31e-06 5.44e-07 1.61e-07 7.75e-07 1.07e-06 9.9e-07 6.82e-07 5.83e-07
ENSG00000187801 \N -246541 1.58e-06 1.81e-06 2.86e-07 1.28e-06 4.83e-07 6.4e-07 1.27e-06 4.23e-07 1.71e-06 7.25e-07 1.97e-06 1.27e-06 2.63e-06 4.89e-07 3.66e-07 1.06e-06 1.07e-06 1.18e-06 5.52e-07 6.51e-07 6.64e-07 1.92e-06 1.54e-06 8.41e-07 2.48e-06 9.36e-07 1.04e-06 1.1e-06 1.66e-06 1.39e-06 7.86e-07 2.83e-07 3.78e-07 7.63e-07 7.59e-07 5.92e-07 6.72e-07 3.6e-07 5.95e-07 2.15e-07 2.88e-07 2.11e-06 3.5e-07 1.3e-07 4.11e-07 3.19e-07 3.68e-07 1.97e-07 2.8e-07
ENSG00000259943 \N -54401 9.86e-06 1.01e-05 1.68e-06 6.18e-06 2.41e-06 4.74e-06 1.18e-05 2.14e-06 9.93e-06 5.32e-06 1.3e-05 5.73e-06 1.76e-05 3.53e-06 3.46e-06 6.79e-06 5.31e-06 8.19e-06 2.95e-06 3.17e-06 6.38e-06 1.03e-05 9.89e-06 3.81e-06 1.66e-05 4.48e-06 6.12e-06 4.77e-06 1.22e-05 1.02e-05 5.88e-06 1.04e-06 1.23e-06 3.78e-06 4.81e-06 2.85e-06 1.72e-06 1.99e-06 2.2e-06 1.34e-06 1.29e-06 1.31e-05 1.38e-06 2.73e-07 1.05e-06 1.75e-06 1.84e-06 6.86e-07 4.42e-07