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Genes within 1Mb (chr1:40200667:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 317156 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -117146 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -490981 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -144183 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 508485 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -57569 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 623877 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 509182 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 39280 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -330906 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 160434 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 102940 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -308074 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -779021 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -661696 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -249435 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -276623 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -57300 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -491399 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 317156 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -490981 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -144183 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 508485 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -57569 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 623877 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 411802 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 39280 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -330906 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 160434 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 102940 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -308074 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -779021 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -661696 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -276623 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -57300 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -491399 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 317156 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -117146 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -490981 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -144183 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 508485 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -57569 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 623877 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 411802 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 39280 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -330906 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 160434 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 102940 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -308074 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -779021 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -661696 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -276623 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 429319 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -57300 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -491399 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 317156 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -490981 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -144183 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 508485 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -57569 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 623877 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 411802 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 39280 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -330906 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 160434 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 102940 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -308074 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 245555 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -779021 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -661696 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -249435 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -276623 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 429319 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -57300 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -491399 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -491022 eQTL 0.0446 -0.0419 0.0208 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 509182 eQTL 0.0264 -0.0753 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 39280 eQTL 2.22e-14 0.2 0.0258 0.00366 0.00346 0.0486
ENSG00000117013 KCNQ4 -583120 eQTL 8.16e-03 -0.214 0.0807 0.0 0.0 0.0486
ENSG00000131238 PPT1 102940 eQTL 1.39e-27 0.704 0.0627 0.0 0.0 0.0486
ENSG00000164002 EXO5 -308074 eQTL 9.79e-03 -0.127 0.0491 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -57300 eQTL 3.32e-08 -0.249 0.0447 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -57569 1.98e-05 2.54e-05 3.15e-06 1.22e-05 3.08e-06 7.88e-06 2.77e-05 3.51e-06 1.9e-05 8.88e-06 2.45e-05 8.69e-06 3.65e-05 7.85e-06 5.26e-06 1.06e-05 1e-05 1.6e-05 4.98e-06 4.62e-06 8.43e-06 2.06e-05 1.87e-05 5.06e-06 2.97e-05 5.42e-06 8.23e-06 8.03e-06 2.16e-05 1.58e-05 1.29e-05 1.33e-06 1.64e-06 4.49e-06 7.58e-06 3.76e-06 1.79e-06 2.51e-06 3.24e-06 2.07e-06 1.12e-06 2.75e-05 2.72e-06 2.91e-07 1.58e-06 2.58e-06 2.8e-06 1e-06 1.04e-06
ENSG00000117000 RLF 39280 2.47e-05 2.95e-05 4.31e-06 1.35e-05 3.8e-06 1e-05 3.46e-05 3.76e-06 2.31e-05 1.09e-05 2.99e-05 1.07e-05 4.19e-05 9.95e-06 5.8e-06 1.3e-05 1.22e-05 1.92e-05 6.31e-06 5.35e-06 9.67e-06 2.5e-05 2.39e-05 6.27e-06 3.46e-05 5.96e-06 1.01e-05 9.23e-06 2.67e-05 1.89e-05 1.5e-05 1.67e-06 2.04e-06 5.45e-06 8.98e-06 4.57e-06 2.08e-06 2.74e-06 3.71e-06 2.62e-06 1.44e-06 3.29e-05 2.65e-06 3.57e-07 1.97e-06 2.87e-06 3.43e-06 1.3e-06 1.32e-06
ENSG00000117016 \N -465015 1.25e-06 9e-07 3.04e-07 7.82e-07 1.78e-07 4.51e-07 1.2e-06 3.46e-07 1.15e-06 3.87e-07 1.67e-06 5.97e-07 1.95e-06 2.65e-07 5.72e-07 6.72e-07 9.01e-07 6.13e-07 7.73e-07 3.72e-07 4.57e-07 1.24e-06 8.03e-07 5.39e-07 1.94e-06 3.75e-07 6.13e-07 5.63e-07 9.4e-07 1.22e-06 5.67e-07 5.45e-08 2.34e-07 2.33e-07 3.54e-07 4.34e-07 4.77e-07 1.54e-07 1.56e-07 1.8e-08 3.24e-08 1.3e-06 3.55e-07 1.9e-07 1.73e-07 7.5e-08 1.78e-07 8.49e-08 1.58e-07
ENSG00000131238 PPT1 102940 1.33e-05 1.57e-05 2.48e-06 8.26e-06 2.32e-06 5.45e-06 1.78e-05 2.37e-06 1.35e-05 6.12e-06 1.75e-05 6.62e-06 2.44e-05 4.46e-06 4.27e-06 8.14e-06 7.02e-06 1.11e-05 3.33e-06 3.13e-06 6.84e-06 1.28e-05 1.13e-05 3.36e-06 2.07e-05 4.49e-06 7.34e-06 5.22e-06 1.44e-05 1.05e-05 8.68e-06 1.02e-06 1.29e-06 3.53e-06 5.32e-06 2.77e-06 1.83e-06 1.91e-06 1.99e-06 9.98e-07 9.74e-07 1.8e-05 1.84e-06 2.64e-07 8.64e-07 1.72e-06 1.74e-06 7.75e-07 5.34e-07
ENSG00000259943 AL050341.2 -57300 1.98e-05 2.56e-05 3.18e-06 1.22e-05 3.06e-06 7.88e-06 2.8e-05 3.51e-06 1.9e-05 8.91e-06 2.48e-05 8.71e-06 3.65e-05 7.86e-06 5.31e-06 1.07e-05 1e-05 1.6e-05 4.98e-06 4.62e-06 8.43e-06 2.08e-05 1.9e-05 5.06e-06 2.99e-05 5.51e-06 8.23e-06 8.03e-06 2.18e-05 1.6e-05 1.29e-05 1.33e-06 1.64e-06 4.49e-06 7.59e-06 3.83e-06 1.79e-06 2.51e-06 3.31e-06 2.07e-06 1.12e-06 2.78e-05 2.72e-06 2.91e-07 1.58e-06 2.58e-06 2.8e-06 1.02e-06 1.04e-06