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Genes within 1Mb (chr1:40194530:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 311019 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -123283 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -497118 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -150320 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 502348 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -63706 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 617740 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 503045 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 33143 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -337043 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 154297 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 96803 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -314211 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -785158 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -667833 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -255572 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -282760 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -63437 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -497536 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 311019 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -497118 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -150320 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 502348 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -63706 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 617740 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 405665 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 33143 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -337043 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 154297 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 96803 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -314211 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -785158 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -667833 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -282760 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -63437 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -497536 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 311019 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -123283 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -497118 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -150320 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 502348 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -63706 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 617740 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 405665 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 33143 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -337043 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 154297 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 96803 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -314211 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -785158 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -667833 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -282760 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 423182 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -63437 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -497536 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 311019 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -497118 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -150320 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 502348 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -63706 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 617740 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 405665 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 33143 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -337043 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 154297 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 96803 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -314211 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 239418 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -785158 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -667833 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -255572 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -282760 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 423182 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -63437 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -497536 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -497159 eQTL 0.0449 -0.0419 0.0209 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 503045 eQTL 0.0271 -0.0751 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 33143 eQTL 2.05e-14 0.201 0.0258 0.00395 0.00375 0.0486
ENSG00000117013 KCNQ4 -589257 eQTL 8.34e-03 -0.214 0.0809 0.0 0.0 0.0486
ENSG00000131238 PPT1 96803 eQTL 1.12e-27 0.707 0.0628 0.0 0.0 0.0486
ENSG00000164002 EXO5 -314211 eQTL 9.44e-03 -0.128 0.0492 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -63437 eQTL 3.55e-08 -0.249 0.0448 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -63706 1.1e-05 1.18e-05 1.36e-06 6.9e-06 2.35e-06 4.58e-06 1.18e-05 1.58e-06 9.65e-06 5.39e-06 1.24e-05 5.35e-06 1.68e-05 3.88e-06 2.94e-06 6.33e-06 4.66e-06 7.6e-06 2.87e-06 2.77e-06 5.02e-06 9.57e-06 8.1e-06 3.21e-06 1.66e-05 2.89e-06 5.16e-06 4.45e-06 1.22e-05 9.37e-06 5.67e-06 9.62e-07 1.25e-06 3.12e-06 4.54e-06 2.28e-06 1.71e-06 1.86e-06 1.59e-06 9.96e-07 8.6e-07 1.37e-05 1.27e-06 1.79e-07 6.97e-07 1.68e-06 1.5e-06 7.12e-07 5.43e-07
ENSG00000117000 RLF 33143 1.6e-05 1.71e-05 2.86e-06 1.04e-05 2.58e-06 7.14e-06 2.34e-05 2.4e-06 1.62e-05 8.14e-06 2.08e-05 7.82e-06 2.95e-05 7.21e-06 5.1e-06 9.46e-06 8.44e-06 1.33e-05 4.65e-06 3.93e-06 7.95e-06 1.58e-05 1.63e-05 4.9e-06 2.77e-05 4.5e-06 7.96e-06 7.33e-06 1.9e-05 1.64e-05 1.08e-05 1.18e-06 1.46e-06 4.1e-06 6.48e-06 3.78e-06 1.71e-06 2.38e-06 2.7e-06 1.84e-06 1.12e-06 2.19e-05 2.35e-06 2.2e-07 1.17e-06 2.45e-06 2.84e-06 8.32e-07 6.2e-07
ENSG00000117016 \N -471152 6.33e-07 3.11e-07 6.28e-08 3.05e-07 1.05e-07 1.57e-07 3.44e-07 5.82e-08 1.98e-07 1.11e-07 2.38e-07 1.59e-07 4.11e-07 8.42e-08 7.79e-08 9.35e-08 4.63e-08 2.33e-07 8.93e-08 8.69e-08 1.33e-07 2.06e-07 2.04e-07 4.17e-08 2.99e-07 1.31e-07 1.37e-07 1.47e-07 1.58e-07 2.02e-07 1.39e-07 4.47e-08 5.09e-08 9.09e-08 1.67e-07 3.05e-08 5.71e-08 5.92e-08 5.95e-08 6.43e-08 6e-08 2.74e-07 3.19e-08 1.1e-08 3.4e-08 6.68e-09 8.21e-08 2.05e-09 4.85e-08
ENSG00000131238 PPT1 96803 7.77e-06 9.23e-06 6.39e-07 4.31e-06 1.73e-06 2.7e-06 9.22e-06 1.05e-06 4.68e-06 3.34e-06 8.47e-06 3.01e-06 1.11e-05 3.41e-06 1.29e-06 4.07e-06 2.99e-06 3.73e-06 2.11e-06 1.55e-06 2.66e-06 6.89e-06 5.05e-06 1.93e-06 1.02e-05 1.98e-06 3.53e-06 2.11e-06 7.01e-06 7.58e-06 3.28e-06 4.62e-07 7.66e-07 2.22e-06 2.4e-06 1.17e-06 1.07e-06 4.71e-07 9.5e-07 6.03e-07 4.48e-07 8.54e-06 6.31e-07 1.59e-07 5.95e-07 1.21e-06 1.04e-06 4.59e-07 3.9e-07
ENSG00000259943 AL050341.2 -63437 1.1e-05 1.18e-05 1.36e-06 6.9e-06 2.38e-06 4.6e-06 1.19e-05 1.59e-06 9.65e-06 5.39e-06 1.24e-05 5.33e-06 1.69e-05 3.9e-06 2.94e-06 6.27e-06 4.69e-06 7.53e-06 2.87e-06 2.88e-06 5.11e-06 9.62e-06 8.25e-06 3.24e-06 1.67e-05 2.92e-06 5.21e-06 4.45e-06 1.23e-05 9.37e-06 5.62e-06 9.74e-07 1.27e-06 3.12e-06 4.59e-06 2.21e-06 1.71e-06 1.85e-06 1.6e-06 9.96e-07 8.81e-07 1.37e-05 1.27e-06 1.79e-07 7.38e-07 1.63e-06 1.47e-06 7.11e-07 5.27e-07