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Genes within 1Mb (chr1:40192979:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 309468 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -124834 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -498669 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -151871 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 500797 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -65257 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 616189 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 501494 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 31592 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -338594 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 152746 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 95252 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -315762 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -786709 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -669384 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -257123 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -284311 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -64988 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -499087 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 309468 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -498669 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -151871 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 500797 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -65257 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 616189 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 404114 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 31592 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -338594 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 152746 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 95252 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -315762 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -786709 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -669384 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -284311 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -64988 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -499087 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 309468 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -124834 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -498669 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -151871 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 500797 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -65257 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 616189 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 404114 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 31592 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -338594 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 152746 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 95252 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -315762 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -786709 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -669384 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -284311 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 421631 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -64988 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -499087 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 309468 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -498669 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -151871 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 500797 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -65257 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 616189 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 404114 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 31592 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -338594 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 152746 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 95252 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -315762 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 237867 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -786709 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -669384 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -257123 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -284311 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 421631 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -64988 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -499087 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -498710 eQTL 0.045 -0.0419 0.0209 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 501494 eQTL 0.027 -0.0752 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 31592 eQTL 2.09e-14 0.2 0.0258 0.00387 0.00367 0.0486
ENSG00000117013 KCNQ4 -590808 eQTL 8.35e-03 -0.214 0.0809 0.0 0.0 0.0486
ENSG00000131238 PPT1 95252 eQTL 1.14e-27 0.707 0.0628 0.0 0.0 0.0486
ENSG00000164002 EXO5 -315762 eQTL 9.35e-03 -0.128 0.0492 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -64988 eQTL 3.5e-08 -0.249 0.0448 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -65257 8.31e-06 1.09e-05 1.35e-06 6.3e-06 2.09e-06 4.25e-06 1.04e-05 2.07e-06 9.39e-06 5.09e-06 1.23e-05 5.63e-06 1.45e-05 3.65e-06 2.83e-06 6.35e-06 4.38e-06 6.9e-06 2.47e-06 2.91e-06 4.72e-06 8.14e-06 7.55e-06 2.84e-06 1.37e-05 3.36e-06 4.81e-06 3.37e-06 9.57e-06 7.86e-06 5.54e-06 8.39e-07 1.14e-06 2.99e-06 4.59e-06 2.22e-06 1.63e-06 1.85e-06 2.15e-06 1.04e-06 8.22e-07 1.24e-05 1.42e-06 1.65e-07 7.77e-07 1.61e-06 1.35e-06 6.96e-07 5.77e-07
ENSG00000117000 RLF 31592 1.42e-05 1.92e-05 2.95e-06 1.08e-05 2.4e-06 6.96e-06 2.07e-05 2.96e-06 1.59e-05 7.13e-06 1.99e-05 8.18e-06 2.82e-05 7.03e-06 4.93e-06 8.95e-06 8.33e-06 1.27e-05 4.15e-06 4.08e-06 7.06e-06 1.39e-05 1.58e-05 4.37e-06 2.63e-05 5.08e-06 7.6e-06 5.78e-06 1.66e-05 1.43e-05 1.13e-05 1e-06 1.44e-06 4.05e-06 6.9e-06 3.35e-06 1.72e-06 2.33e-06 2.91e-06 1.56e-06 9.34e-07 2.01e-05 2.47e-06 1.73e-07 8.86e-07 2.35e-06 2.51e-06 7.25e-07 5e-07
ENSG00000117016 \N -472703 3.92e-07 2.88e-07 7.16e-08 3.58e-07 1.02e-07 1.57e-07 3.94e-07 1.21e-07 2.12e-07 1.46e-07 3.32e-07 1.91e-07 4.11e-07 1.01e-07 1.27e-07 1.14e-07 1.38e-07 2.87e-07 1.36e-07 8.39e-08 1.68e-07 2.24e-07 2.48e-07 7.22e-08 3.98e-07 1.86e-07 1.78e-07 1.54e-07 1.6e-07 2.19e-07 1.71e-07 5.08e-08 5.73e-08 1.18e-07 2.61e-07 5.23e-08 1.07e-07 7.75e-08 4.44e-08 7.89e-08 3.17e-08 2e-07 2.47e-08 1.99e-08 4.99e-08 9.12e-09 9.38e-08 3.2e-09 4.52e-08
ENSG00000131238 PPT1 95252 5.62e-06 8.57e-06 6.5e-07 4.07e-06 1.71e-06 2.56e-06 8.7e-06 1.3e-06 5.17e-06 3.29e-06 8.9e-06 3.68e-06 1.06e-05 3.13e-06 1.47e-06 3.88e-06 3.12e-06 3.86e-06 1.66e-06 1.69e-06 2.65e-06 6.08e-06 5.02e-06 1.97e-06 9.75e-06 2.12e-06 3.22e-06 1.73e-06 6.27e-06 6.51e-06 3.64e-06 4.46e-07 7.22e-07 2.39e-06 2.5e-06 1.33e-06 1.01e-06 5.41e-07 1.38e-06 6.24e-07 5.68e-07 8.48e-06 8.87e-07 1.57e-07 5.95e-07 1.07e-06 1.02e-06 6.71e-07 4.53e-07
ENSG00000259943 AL050341.2 -64988 8.29e-06 1.12e-05 1.35e-06 6.34e-06 2.09e-06 4.23e-06 1.04e-05 2.08e-06 9.4e-06 5.14e-06 1.23e-05 5.63e-06 1.46e-05 3.68e-06 2.83e-06 6.35e-06 4.31e-06 7.08e-06 2.5e-06 2.91e-06 4.68e-06 8.12e-06 7.49e-06 2.9e-06 1.39e-05 3.49e-06 4.8e-06 3.29e-06 9.57e-06 7.86e-06 5.58e-06 8.39e-07 1.14e-06 2.93e-06 4.59e-06 2.28e-06 1.63e-06 1.89e-06 2.15e-06 1.02e-06 8.22e-07 1.24e-05 1.39e-06 1.65e-07 7.77e-07 1.61e-06 1.4e-06 6.95e-07 5.77e-07