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Genes within 1Mb (chr1:40191181:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 307670 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -126632 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -500467 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -153669 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 498999 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -67055 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 614391 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 499696 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 29794 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -340392 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 150948 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 93454 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -317560 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -788507 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -671182 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -258921 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -286109 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -66786 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -500885 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 307670 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -500467 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -153669 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 498999 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -67055 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 614391 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 402316 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 29794 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -340392 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 150948 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 93454 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -317560 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -788507 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -671182 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -286109 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -66786 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -500885 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 307670 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -126632 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -500467 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -153669 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 498999 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -67055 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 614391 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 402316 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 29794 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -340392 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 150948 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 93454 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -317560 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -788507 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -671182 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -286109 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 419833 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -66786 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -500885 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 307670 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -500467 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -153669 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 498999 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -67055 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 614391 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 402316 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 29794 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -340392 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 150948 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 93454 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -317560 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 236069 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -788507 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -671182 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -258921 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -286109 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 419833 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -66786 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -500885 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -500508 eQTL 0.045 -0.0419 0.0209 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 499696 eQTL 0.027 -0.0752 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 29794 eQTL 2.09e-14 0.2 0.0258 0.00387 0.00367 0.0486
ENSG00000117013 KCNQ4 -592606 eQTL 8.35e-03 -0.214 0.0809 0.0 0.0 0.0486
ENSG00000131238 PPT1 93454 eQTL 1.14e-27 0.707 0.0628 0.0 0.0 0.0486
ENSG00000164002 EXO5 -317560 eQTL 9.35e-03 -0.128 0.0492 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -66786 eQTL 3.5e-08 -0.249 0.0448 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -67055 7.7e-06 8.42e-06 1.3e-06 3.95e-06 2.18e-06 3.46e-06 9.59e-06 1.75e-06 6.53e-06 4.38e-06 9.71e-06 4.49e-06 1.15e-05 3.68e-06 1.83e-06 5.78e-06 3.71e-06 5.52e-06 2.56e-06 2.59e-06 4.51e-06 7.65e-06 6.71e-06 3.08e-06 1.14e-05 3.09e-06 4.39e-06 3.11e-06 7.59e-06 7.71e-06 4.32e-06 7.89e-07 1.18e-06 2.85e-06 2.91e-06 2.21e-06 1.65e-06 1.56e-06 1.63e-06 1.02e-06 1e-06 9.18e-06 1.26e-06 1.5e-07 7.85e-07 1.51e-06 1.21e-06 6.9e-07 4.37e-07
ENSG00000117000 RLF 29794 1.33e-05 1.36e-05 2.73e-06 8.58e-06 2.79e-06 6.55e-06 1.93e-05 2.9e-06 1.44e-05 7.31e-06 1.85e-05 7.15e-06 2.55e-05 5.14e-06 4.43e-06 9.02e-06 7.73e-06 1.25e-05 4.12e-06 4.12e-06 7.68e-06 1.35e-05 1.4e-05 5.19e-06 2.42e-05 5.34e-06 7.58e-06 6.34e-06 1.61e-05 1.54e-05 9.85e-06 1.19e-06 1.67e-06 4.8e-06 6.34e-06 3.93e-06 2.04e-06 2.61e-06 3.25e-06 2.23e-06 1.67e-06 1.79e-05 2.39e-06 3.18e-07 1.93e-06 2.52e-06 2.71e-06 1.24e-06 1.03e-06
ENSG00000117016 \N -474501 8.15e-07 4.63e-07 1.03e-07 3.58e-07 9.72e-08 1.71e-07 4.68e-07 1.11e-07 3.82e-07 2.16e-07 5.29e-07 3.27e-07 6.08e-07 1.1e-07 1.68e-07 2.14e-07 2.07e-07 3.73e-07 1.62e-07 1.31e-07 1.89e-07 3.13e-07 3.07e-07 1.25e-07 6.02e-07 2.4e-07 2.43e-07 2.57e-07 3.27e-07 3.71e-07 2.43e-07 7.33e-08 5.77e-08 1.16e-07 2.58e-07 7.56e-08 1.01e-07 6.89e-08 4.9e-08 5.54e-08 5.56e-08 4.04e-07 2.71e-08 1.74e-08 1.16e-07 1.95e-08 7.89e-08 3.14e-09 5.65e-08
ENSG00000131238 PPT1 93454 5.2e-06 5.11e-06 6.41e-07 3.45e-06 1.5e-06 1.53e-06 6.83e-06 1.26e-06 4.71e-06 2.84e-06 6.86e-06 3.33e-06 8.72e-06 1.7e-06 9.99e-07 3.78e-06 1.94e-06 3.84e-06 1.51e-06 1.55e-06 2.82e-06 5.45e-06 4.7e-06 1.92e-06 8.44e-06 2.07e-06 2.65e-06 1.73e-06 5.45e-06 5.36e-06 2.62e-06 4.15e-07 7.92e-07 2.26e-06 2.06e-06 1.33e-06 1.03e-06 4.51e-07 9.96e-07 5.94e-07 8.05e-07 7.2e-06 6.29e-07 1.64e-07 7.94e-07 1.07e-06 9.99e-07 6.71e-07 5.83e-07
ENSG00000259943 AL050341.2 -66786 7.7e-06 8.57e-06 1.3e-06 4e-06 2.21e-06 3.46e-06 9.71e-06 1.75e-06 6.53e-06 4.27e-06 9.93e-06 4.46e-06 1.13e-05 3.66e-06 1.86e-06 5.82e-06 3.7e-06 5.56e-06 2.58e-06 2.59e-06 4.48e-06 7.71e-06 6.79e-06 3.08e-06 1.15e-05 3.11e-06 4.47e-06 3.11e-06 7.73e-06 7.65e-06 4.32e-06 7.72e-07 1.19e-06 2.85e-06 2.91e-06 2.22e-06 1.65e-06 1.57e-06 1.64e-06 1.04e-06 1.01e-06 9.19e-06 1.28e-06 1.44e-07 7.85e-07 1.48e-06 1.23e-06 6.88e-07 4.37e-07