logo

Genes within 1Mb (chr1:40190388:A:AT):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 306877 sc-eQTL 4.17e-01 -0.154 0.19 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -127425 sc-eQTL 5.27e-01 -0.0923 0.146 0.05 CD4_CTL L2
ENSG00000066136 NFYC -501260 sc-eQTL 3.09e-01 0.204 0.2 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -154462 sc-eQTL 3.91e-01 -0.112 0.13 0.05 CD4_CTL L2
ENSG00000084072 PPIE 498206 sc-eQTL 6.23e-01 -0.0979 0.199 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -67848 sc-eQTL 9.29e-01 -0.0176 0.199 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 613598 sc-eQTL 1.85e-01 -0.244 0.184 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 498903 sc-eQTL 9.33e-01 0.0145 0.173 0.05 CD4_CTL L2
ENSG00000117000 RLF 29001 sc-eQTL 7.53e-01 -0.0601 0.191 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -341185 sc-eQTL 8.46e-01 0.0351 0.18 0.05 CD4_CTL L2
ENSG00000131236 CAP1 150155 sc-eQTL 3.89e-03 0.369 0.126 0.05 CD4_CTL L2
ENSG00000131238 PPT1 92661 sc-eQTL 1.76e-01 0.271 0.199 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -318353 sc-eQTL 2.84e-01 0.202 0.187 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -789300 sc-eQTL 9.64e-01 -0.00827 0.184 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -671975 sc-eQTL 7.58e-01 0.0486 0.158 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -259714 sc-eQTL 4.73e-01 -0.122 0.17 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -286902 sc-eQTL 6.87e-01 0.0744 0.185 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -67579 sc-eQTL 8.47e-04 0.592 0.175 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -501678 sc-eQTL 2.62e-01 -0.21 0.187 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 306877 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -127425 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -501260 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -154462 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 498206 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -67848 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 613598 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 401523 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 29001 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -341185 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 150155 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 92661 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -318353 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -789300 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -671975 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -286902 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 419040 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -67579 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -501678 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -501301 eQTL 0.045 -0.0419 0.0209 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 498903 eQTL 0.027 -0.0752 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 29001 eQTL 2.09e-14 0.2 0.0258 0.00387 0.00367 0.0486
ENSG00000117013 KCNQ4 -593399 eQTL 8.35e-03 -0.214 0.0809 0.0 0.0 0.0486
ENSG00000131238 PPT1 92661 eQTL 1.14e-27 0.707 0.0628 0.0 0.0 0.0486
ENSG00000164002 EXO5 -318353 eQTL 9.35e-03 -0.128 0.0492 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -67579 eQTL 3.5e-08 -0.249 0.0448 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -67848 9.17e-06 9.78e-06 1.23e-06 6.69e-06 1.94e-06 2.58e-06 1.05e-05 1.23e-06 7.72e-06 4.28e-06 1.19e-05 4.97e-06 1.36e-05 3.63e-06 3.46e-06 5.78e-06 4.12e-06 8.03e-06 1.62e-06 1.28e-06 5.16e-06 7.57e-06 8.72e-06 2.06e-06 2.04e-05 2.42e-06 3.73e-06 2.87e-06 7.59e-06 8.58e-06 5.42e-06 4.18e-07 6.45e-07 2.85e-06 4.83e-06 1.81e-06 9.52e-07 5.58e-07 1.05e-06 5.64e-07 3.62e-07 3.56e-05 1.43e-06 1.96e-07 6.9e-07 8.07e-07 1.4e-06 2.22e-07 4.23e-07
ENSG00000117000 RLF 29001 2.34e-05 2.95e-05 2.45e-06 1.29e-05 4.91e-06 7.76e-06 3.35e-05 3.8e-06 2.05e-05 8.97e-06 3.16e-05 1.13e-05 3.85e-05 1.09e-05 5.36e-06 1.13e-05 1.22e-05 2.25e-05 4.64e-06 3.76e-06 9.07e-06 1.94e-05 2.66e-05 4.69e-06 4.3e-05 5.4e-06 9.09e-06 8.16e-06 2.43e-05 2.19e-05 1.29e-05 1.01e-06 1.26e-06 4.84e-06 9.3e-06 3.76e-06 1.73e-06 2.41e-06 2.14e-06 2.49e-06 9.75e-07 4.48e-05 2.8e-06 3.57e-07 2.04e-06 2.74e-06 3.43e-06 6.17e-07 6.2e-07
ENSG00000117016 \N -475294 6.8e-07 1.67e-07 6.26e-08 2.92e-07 8.83e-08 8.63e-08 2.24e-07 5.49e-08 1.5e-07 4.74e-08 2.04e-07 9e-08 4.34e-07 8.66e-08 6.04e-08 7.97e-08 4.01e-08 2.83e-07 5.36e-08 4.03e-08 1.25e-07 1.26e-07 1.86e-07 3.68e-08 3.14e-07 1.14e-07 1.06e-07 9.57e-08 1.16e-07 1.36e-07 1.08e-07 3.76e-08 2.74e-08 8.7e-08 1.27e-07 3.53e-08 4.89e-08 9.6e-08 8.3e-08 3.01e-08 3.89e-08 1.34e-06 4.19e-08 1.78e-08 9.21e-08 1.84e-08 1.25e-07 4.82e-09 4.61e-08
ENSG00000131238 PPT1 92661 6.7e-06 7.69e-06 7.05e-07 5.25e-06 1.53e-06 1.52e-06 8.7e-06 9.96e-07 4.54e-06 2.99e-06 7.9e-06 3.24e-06 1.07e-05 3.86e-06 1.86e-06 3.84e-06 3.02e-06 4.1e-06 1.33e-06 9.91e-07 3.2e-06 4.83e-06 5.53e-06 1.36e-06 1.27e-05 1.93e-06 2.49e-06 1.52e-06 4.51e-06 6.83e-06 3.64e-06 5.4e-07 3.79e-07 2.31e-06 3.58e-06 1.07e-06 9.24e-07 4.24e-07 1.18e-06 3.79e-07 1.96e-07 2.65e-05 8.75e-07 2.09e-07 6.1e-07 7.78e-07 1e-06 2.63e-07 1.77e-07
ENSG00000259943 AL050341.2 -67579 9.17e-06 9.98e-06 1.23e-06 6.77e-06 1.98e-06 2.59e-06 1.06e-05 1.29e-06 7.75e-06 4.22e-06 1.19e-05 4.94e-06 1.36e-05 3.72e-06 3.49e-06 5.84e-06 4.16e-06 8e-06 1.65e-06 1.39e-06 5.1e-06 7.65e-06 8.83e-06 2.03e-06 2.05e-05 2.46e-06 3.82e-06 2.99e-06 7.59e-06 8.64e-06 5.4e-06 4.18e-07 6.45e-07 2.86e-06 4.83e-06 1.83e-06 9.52e-07 5.58e-07 1.06e-06 5.79e-07 3.61e-07 3.56e-05 1.43e-06 1.96e-07 6.74e-07 8.06e-07 1.38e-06 2.23e-07 4.39e-07