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Genes within 1Mb (chr1:40190296:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 306785 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -127517 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -501352 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -154554 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 498114 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -67940 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 613506 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 498811 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 28909 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -341277 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 150063 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 92569 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -318445 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -789392 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -672067 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -259806 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -286994 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -67671 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -501770 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 306785 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -501352 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -154554 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 498114 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -67940 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 613506 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 401431 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 28909 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -341277 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 150063 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 92569 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -318445 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -789392 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -672067 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -286994 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -67671 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -501770 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 306785 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -127517 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -501352 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -154554 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 498114 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -67940 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 613506 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 401431 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 28909 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -341277 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 150063 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 92569 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -318445 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -789392 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -672067 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -286994 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 418948 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -67671 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -501770 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 306785 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -501352 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -154554 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 498114 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -67940 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 613506 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 401431 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 28909 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -341277 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 150063 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 92569 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -318445 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 235184 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -789392 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -672067 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -259806 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -286994 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 418948 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -67671 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -501770 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -501393 eQTL 0.045 -0.0419 0.0209 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 498811 eQTL 0.027 -0.0752 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 28909 eQTL 2.09e-14 0.2 0.0258 0.00387 0.00367 0.0486
ENSG00000117013 KCNQ4 -593491 eQTL 8.35e-03 -0.214 0.0809 0.0 0.0 0.0486
ENSG00000131238 PPT1 92569 eQTL 1.14e-27 0.707 0.0628 0.0 0.0 0.0486
ENSG00000164002 EXO5 -318445 eQTL 9.35e-03 -0.128 0.0492 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -67671 eQTL 3.5e-08 -0.249 0.0448 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -67940 6.55e-06 9.32e-06 6.71e-07 3.8e-06 1.63e-06 1.53e-06 8.84e-06 1.28e-06 6.09e-06 3.49e-06 8.91e-06 3.52e-06 1.14e-05 3.66e-06 1.21e-06 5.33e-06 3.12e-06 3.8e-06 1.44e-06 1.15e-06 2.81e-06 7.56e-06 5.31e-06 1.48e-06 1.18e-05 2.08e-06 3.51e-06 1.74e-06 5.66e-06 5.28e-06 4.06e-06 4.18e-07 6.32e-07 1.62e-06 1.99e-06 9.03e-07 1.07e-06 4.24e-07 8.52e-07 4.57e-07 2.23e-07 1.13e-05 8.6e-07 1.54e-07 6.1e-07 1.17e-06 8.08e-07 6.29e-07 1.63e-07
ENSG00000117000 RLF 28909 1.42e-05 1.92e-05 2.36e-06 8.67e-06 2.34e-06 6.03e-06 1.93e-05 2.51e-06 1.54e-05 6.68e-06 1.92e-05 7.21e-06 2.73e-05 6.24e-06 3.58e-06 8.95e-06 8.03e-06 1.18e-05 3.49e-06 3.12e-06 6.47e-06 1.31e-05 1.39e-05 3.67e-06 2.75e-05 4.45e-06 7.57e-06 5.24e-06 1.43e-05 1.18e-05 1.05e-05 1.02e-06 1.12e-06 3.5e-06 6.28e-06 2.75e-06 1.79e-06 1.96e-06 2.06e-06 9.82e-07 1.01e-06 2.19e-05 2.36e-06 1.9e-07 8.89e-07 1.72e-06 1.74e-06 7.99e-07 4.32e-07
ENSG00000117016 \N -475386 5.14e-07 3.55e-07 6.45e-08 3.05e-07 1.1e-07 1.03e-07 3.25e-07 5.82e-08 2.26e-07 1.37e-07 2.84e-07 1.82e-07 4.05e-07 8.55e-08 6.12e-08 1.49e-07 5.42e-08 2.83e-07 8e-08 6.03e-08 1.27e-07 2.3e-07 2.11e-07 4.27e-08 4.54e-07 2.01e-07 1.39e-07 1.47e-07 1.47e-07 1.39e-07 1.59e-07 4.78e-08 3.56e-08 1.03e-07 6.98e-08 3.18e-08 6.67e-08 7.63e-08 4.83e-08 7.78e-08 3.17e-08 4.68e-07 3.46e-08 5.96e-09 3.61e-08 9.12e-09 8.67e-08 0.0 4.83e-08
ENSG00000131238 PPT1 92569 4.65e-06 7.64e-06 5.8e-07 3.15e-06 9.03e-07 1.27e-06 4.48e-06 1.04e-06 5.05e-06 2.5e-06 5.99e-06 3.45e-06 7.77e-06 1.76e-06 1.18e-06 3.84e-06 2.01e-06 3.39e-06 1.39e-06 1.05e-06 1.92e-06 4.86e-06 4.56e-06 1.82e-06 8.55e-06 1.65e-06 2.47e-06 1.51e-06 4.32e-06 3.6e-06 2.81e-06 5.43e-07 5.79e-07 1.59e-06 2.01e-06 9.72e-07 9.22e-07 4.25e-07 1.32e-06 3.46e-07 2.44e-07 8.12e-06 3.47e-07 1.63e-07 3.61e-07 4.12e-07 8.19e-07 2.41e-07 2.13e-07
ENSG00000259943 AL050341.2 -67671 6.7e-06 9.4e-06 6.9e-07 3.8e-06 1.61e-06 1.56e-06 8.88e-06 1.21e-06 6.1e-06 3.55e-06 8.95e-06 3.52e-06 1.12e-05 3.74e-06 1.17e-06 5.33e-06 3.09e-06 3.77e-06 1.44e-06 1.15e-06 2.77e-06 7.56e-06 5.5e-06 1.46e-06 1.2e-05 2.08e-06 3.61e-06 1.74e-06 5.87e-06 5.27e-06 4.13e-06 4.18e-07 6.12e-07 1.68e-06 2.04e-06 9.21e-07 1.08e-06 4.24e-07 8.51e-07 4.56e-07 2.22e-07 1.14e-05 8.6e-07 1.59e-07 6.1e-07 1.12e-06 8.08e-07 6.3e-07 1.63e-07