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Genes within 1Mb (chr1:40187598:CTG:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 304087 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -130215 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -504050 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -157252 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 495416 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -70638 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 610808 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 496113 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 26211 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -343975 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 147365 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 89871 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -321143 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -792090 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -674765 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -262504 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -289692 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -70369 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -504468 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 304087 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -504050 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -157252 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 495416 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -70638 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 610808 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 398733 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 26211 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -343975 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 147365 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 89871 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -321143 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -792090 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -674765 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -289692 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -70369 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -504468 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 304087 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -130215 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -504050 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -157252 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 495416 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -70638 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 610808 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 398733 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 26211 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -343975 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 147365 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 89871 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -321143 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -792090 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -674765 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -289692 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 416250 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -70369 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -504468 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 304087 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -504050 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -157252 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 495416 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -70638 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 610808 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 398733 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 26211 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -343975 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 147365 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 89871 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -321143 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 232486 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -792090 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -674765 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -262504 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -289692 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 416250 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -70369 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -504468 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -504091 eQTL 0.0451 -0.0419 0.0209 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 496113 eQTL 0.0271 -0.0751 0.034 0.0 0.0 0.0486
ENSG00000117000 RLF 26211 eQTL 2.12e-14 0.2 0.0258 0.00382 0.00362 0.0486
ENSG00000117013 KCNQ4 -596189 eQTL 8.45e-03 -0.213 0.0809 0.0 0.0 0.0486
ENSG00000131238 PPT1 89871 eQTL 1.12e-27 0.707 0.0628 0.0 0.0 0.0486
ENSG00000164002 EXO5 -321143 eQTL 9.26e-03 -0.128 0.0492 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -70369 eQTL 3.47e-08 -0.249 0.0448 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -70638 5.09e-05 3.3e-05 8.39e-06 1.21e-05 3.53e-06 1e-05 5.32e-05 2.2e-06 1.84e-05 7.9e-06 2.68e-05 9.87e-06 3.91e-05 7.67e-06 5.99e-06 1.13e-05 1.56e-05 1.81e-05 6.02e-06 3.61e-06 9.45e-06 2.26e-05 3.86e-05 5.44e-06 3.21e-05 6.09e-06 8.01e-06 5.65e-06 3.76e-05 1.91e-05 1.29e-05 9.86e-07 1.24e-06 3.93e-06 7.67e-06 4.2e-06 2.37e-06 2.49e-06 2.68e-06 2.03e-06 1.07e-06 5.71e-05 4.31e-06 3.6e-07 1.85e-06 2.85e-06 2.93e-06 7.23e-07 1.06e-06
ENSG00000117000 RLF 26211 8.07e-05 4.97e-05 8.39e-06 1.6e-05 6.17e-06 1.86e-05 6.08e-05 3.74e-06 3.52e-05 1.33e-05 5.2e-05 2.1e-05 7.42e-05 1.57e-05 8e-06 2.23e-05 2.51e-05 2.91e-05 8.82e-06 6.34e-06 1.82e-05 4.07e-05 4.91e-05 1e-05 4.95e-05 1.01e-05 1.42e-05 1.12e-05 4.84e-05 3.11e-05 2.53e-05 1.58e-06 2.61e-06 6.29e-06 1.19e-05 5.68e-06 2.93e-06 3.13e-06 3.81e-06 3.22e-06 1.67e-06 6.82e-05 5.69e-06 2.64e-07 2.59e-06 4.63e-06 4.23e-06 1.49e-06 1.47e-06
ENSG00000117016 \N -478084 4.74e-06 4.55e-06 6.57e-07 1.95e-06 4.71e-07 7.88e-07 4.31e-06 4.11e-07 1.75e-06 5.89e-07 2.6e-06 1.34e-06 5.46e-06 1.29e-06 1.2e-06 1.02e-06 1.54e-06 2.34e-06 9.64e-07 6.52e-07 8.81e-07 4.2e-06 3.89e-06 6.27e-07 4.27e-06 1.2e-06 1e-06 7.59e-07 3.87e-06 2.2e-06 7.49e-07 4.51e-08 2.29e-07 1.61e-06 1.68e-06 9.92e-07 7.71e-07 2.87e-07 6.01e-07 3.57e-07 1.92e-07 8.15e-06 4.13e-07 1.58e-07 1.67e-07 3.6e-07 1.68e-07 5.73e-08 5.61e-08
ENSG00000131238 PPT1 89871 4.29e-05 2.87e-05 8.22e-06 1.04e-05 3.07e-06 7.78e-06 4.97e-05 2.03e-06 1.64e-05 6.78e-06 2.1e-05 8.31e-06 3.26e-05 6.04e-06 5.36e-06 9.88e-06 1.35e-05 1.52e-05 4.82e-06 2.99e-06 8.31e-06 1.88e-05 3.51e-05 4.71e-06 2.91e-05 5.39e-06 7.54e-06 4.83e-06 3.36e-05 1.64e-05 1.13e-05 9.05e-07 1.24e-06 3.69e-06 6.5e-06 3.74e-06 2.18e-06 2.18e-06 2.14e-06 1.57e-06 9.98e-07 5.11e-05 3.8e-06 4.08e-07 1.35e-06 2.67e-06 2.46e-06 8.24e-07 6.37e-07
ENSG00000259943 AL050341.2 -70369 5.09e-05 3.34e-05 8.39e-06 1.21e-05 3.53e-06 1.01e-05 5.35e-05 2.16e-06 1.84e-05 7.9e-06 2.68e-05 9.87e-06 3.92e-05 7.67e-06 5.99e-06 1.13e-05 1.56e-05 1.81e-05 6.02e-06 3.61e-06 9.45e-06 2.28e-05 3.86e-05 5.48e-06 3.21e-05 6.09e-06 8.01e-06 5.64e-06 3.76e-05 1.93e-05 1.29e-05 9.98e-07 1.28e-06 3.93e-06 7.74e-06 4.2e-06 2.37e-06 2.49e-06 2.68e-06 2.03e-06 1.07e-06 5.71e-05 4.31e-06 3.6e-07 1.87e-06 2.85e-06 2.95e-06 7.23e-07 1.04e-06