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Genes within 1Mb (chr1:40186149:CTT:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 302638 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -131664 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -505499 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -158701 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 493967 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -72087 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 609359 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 494664 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 24762 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -345424 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 145916 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 88422 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -322592 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -793539 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -676214 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -263953 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -291141 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -71818 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -505917 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 302638 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -505499 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -158701 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 493967 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -72087 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 609359 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 397284 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 24762 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -345424 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 145916 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 88422 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -322592 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -793539 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -676214 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -291141 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -71818 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -505917 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 302638 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -131664 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -505499 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -158701 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 493967 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -72087 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 609359 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 397284 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 24762 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -345424 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 145916 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 88422 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -322592 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -793539 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -676214 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -291141 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 414801 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -71818 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -505917 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 302638 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -505499 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -158701 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 493967 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -72087 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 609359 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 397284 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 24762 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -345424 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 145916 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 88422 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -322592 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 231037 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -793539 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -676214 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -263953 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -291141 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 414801 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -71818 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -505917 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -505540 eQTL 0.0452 -0.0419 0.0209 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 494664 eQTL 0.027 -0.0752 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 24762 eQTL 2.08e-14 0.201 0.0258 0.00388 0.00369 0.0486
ENSG00000117013 KCNQ4 -597638 eQTL 8.34e-03 -0.214 0.0809 0.0 0.0 0.0486
ENSG00000131238 PPT1 88422 eQTL 1.14e-27 0.707 0.0628 0.0 0.0 0.0486
ENSG00000164002 EXO5 -322592 eQTL 9.41e-03 -0.128 0.0492 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -71818 eQTL 3.5e-08 -0.249 0.0448 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -72087 1.46e-05 1.68e-05 4.31e-06 8.5e-06 3.33e-06 6.12e-06 3.31e-05 2.2e-06 1.5e-05 5.93e-06 2.11e-05 6.84e-06 3.48e-05 4.27e-06 5.1e-06 9.16e-06 1.02e-05 1.35e-05 3.47e-06 3.12e-06 7.22e-06 1.44e-05 2.55e-05 4.74e-06 2.61e-05 5.09e-06 7.54e-06 5.64e-06 2.5e-05 1.42e-05 8.5e-06 9.7e-07 1.34e-06 3.93e-06 6.5e-06 4.22e-06 1.83e-06 2.39e-06 2.24e-06 3.69e-06 1.28e-06 3.45e-05 2.88e-06 3.55e-07 1.76e-06 2.69e-06 2.8e-06 8.91e-07 1.01e-06
ENSG00000117000 RLF 24762 3.59e-05 3.14e-05 5.8e-06 1.35e-05 5.05e-06 1.15e-05 5.2e-05 3.39e-06 2.72e-05 9.96e-06 3.61e-05 1.29e-05 6.21e-05 8.55e-06 5.98e-06 1.49e-05 1.58e-05 2.29e-05 5.56e-06 5.36e-06 1.15e-05 2.96e-05 3.62e-05 7.57e-06 3.68e-05 7.23e-06 1.08e-05 9.69e-06 3.69e-05 2.17e-05 1.51e-05 1.65e-06 2.95e-06 6.6e-06 1.01e-05 5.16e-06 2.37e-06 3.12e-06 3.75e-06 4.37e-06 1.74e-06 4.97e-05 3.46e-06 3.59e-07 1.93e-06 3.86e-06 4.3e-06 1.36e-06 1.57e-06
ENSG00000117016 \N -479533 1.26e-06 7.56e-07 5.75e-07 3.25e-07 1.4e-07 4.39e-07 1.13e-06 5.68e-08 6.03e-07 2.87e-07 7.15e-07 3.91e-07 9.79e-07 2.55e-07 4.33e-07 2.84e-07 7.76e-07 4.65e-07 2.92e-07 2.68e-07 2.62e-07 5.2e-07 6.63e-07 3.24e-07 1.64e-06 2.49e-07 5.05e-07 3.9e-07 9.15e-07 8.51e-07 3.66e-07 4.77e-08 5.89e-08 4.51e-07 3.29e-07 3.1e-07 1.94e-07 9.33e-08 4.72e-08 5.72e-08 2.81e-08 6.15e-07 3.65e-07 2.66e-08 1.69e-07 1.39e-08 1.18e-07 0.0 4.8e-08
ENSG00000131238 PPT1 88422 1.31e-05 1.33e-05 3.26e-06 7.37e-06 3.06e-06 5.36e-06 2.56e-05 2.16e-06 1.2e-05 5.58e-06 1.8e-05 6.14e-06 2.76e-05 3.66e-06 4.37e-06 7.79e-06 8.44e-06 1.13e-05 3.29e-06 2.82e-06 6.48e-06 1.22e-05 2.05e-05 4.11e-06 2.14e-05 4.73e-06 7.15e-06 5.08e-06 2.01e-05 1.21e-05 6.81e-06 1.07e-06 1.19e-06 3.59e-06 5.76e-06 3.82e-06 1.75e-06 2.15e-06 2.17e-06 3.19e-06 1.1e-06 2.62e-05 2.86e-06 3.55e-07 1.7e-06 2.49e-06 2.18e-06 7.33e-07 6.66e-07
ENSG00000187801 \N -263958 3.54e-06 2.42e-06 1.37e-06 1.7e-06 8.72e-07 8.43e-07 2.45e-06 3.38e-07 1.72e-06 7.54e-07 1.81e-06 1.29e-06 3.07e-06 1.37e-06 9.13e-07 9.91e-07 1.58e-06 1.46e-06 6.68e-07 1.44e-06 9.48e-07 1.96e-06 3.37e-06 9.91e-07 2.93e-06 1.17e-06 1.21e-06 1.69e-06 2.68e-06 1.8e-06 7.56e-07 2.89e-07 6.23e-07 1.49e-06 1.27e-06 9.01e-07 8.34e-07 3.97e-07 4.74e-07 2.28e-07 3.03e-07 2.75e-06 2.43e-06 1.65e-07 6.1e-07 2.98e-07 4.94e-07 2.7e-07 1.9e-07
ENSG00000259943 AL050341.2 -71818 1.45e-05 1.68e-05 4.31e-06 8.5e-06 3.33e-06 6.16e-06 3.35e-05 2.2e-06 1.5e-05 6e-06 2.11e-05 6.84e-06 3.48e-05 4.27e-06 5.1e-06 9.17e-06 1.02e-05 1.35e-05 3.47e-06 3.12e-06 7.26e-06 1.45e-05 2.57e-05 4.74e-06 2.61e-05 5.12e-06 7.54e-06 5.64e-06 2.5e-05 1.43e-05 8.58e-06 9.7e-07 1.36e-06 3.89e-06 6.5e-06 4.22e-06 1.83e-06 2.39e-06 2.22e-06 3.69e-06 1.28e-06 3.49e-05 2.88e-06 3.55e-07 1.76e-06 2.69e-06 2.8e-06 8.91e-07 1.01e-06
ENSG00000261798 \N 397173 1.31e-06 9.25e-07 9.35e-07 7.82e-07 3.51e-07 6.02e-07 1.5e-06 7.98e-08 1.14e-06 3.82e-07 1.15e-06 6.07e-07 1.55e-06 2.68e-07 5.4e-07 5.69e-07 8.89e-07 5.57e-07 5.29e-07 6.76e-07 4.57e-07 8.66e-07 8.94e-07 5.79e-07 2.06e-06 2.89e-07 7.66e-07 7.22e-07 1.48e-06 1.22e-06 4.71e-07 7.79e-08 1.87e-07 6.19e-07 5.65e-07 4.39e-07 5.32e-07 1.46e-07 6.49e-08 8.22e-09 1.17e-07 1.19e-06 1.13e-06 1.38e-07 3.55e-07 7.36e-08 2.01e-07 2.25e-08 4.68e-08