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Genes within 1Mb (chr1:40182469:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 298958 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -135344 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -509179 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -162381 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 490287 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -75767 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 605679 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 490984 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 21082 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -349104 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 142236 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 84742 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -326272 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -797219 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -679894 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -267633 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -294821 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -75498 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -509597 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 298958 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -509179 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -162381 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 490287 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -75767 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 605679 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 393604 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 21082 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -349104 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 142236 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 84742 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -326272 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -797219 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -679894 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -294821 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -75498 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -509597 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 298958 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -135344 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -509179 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -162381 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 490287 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -75767 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 605679 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 393604 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 21082 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -349104 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 142236 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 84742 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -326272 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -797219 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -679894 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -294821 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 411121 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -75498 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -509597 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 298958 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -509179 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -162381 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 490287 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -75767 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 605679 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 393604 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 21082 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -349104 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 142236 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 84742 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -326272 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 227357 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -797219 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -679894 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -267633 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -294821 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 411121 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -75498 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -509597 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -509220 eQTL 0.0452 -0.0419 0.0209 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 490984 eQTL 0.027 -0.0752 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 21082 eQTL 2.08e-14 0.201 0.0258 0.00388 0.00369 0.0486
ENSG00000117013 KCNQ4 -601318 eQTL 8.34e-03 -0.214 0.0809 0.0 0.0 0.0486
ENSG00000131238 PPT1 84742 eQTL 1.14e-27 0.707 0.0628 0.0 0.0 0.0486
ENSG00000164002 EXO5 -326272 eQTL 9.41e-03 -0.128 0.0492 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -75498 eQTL 3.5e-08 -0.249 0.0448 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -75767 5.61e-06 5.67e-06 6.06e-07 3.42e-06 1.47e-06 1.52e-06 7.52e-06 1.11e-06 4.86e-06 2.82e-06 7.55e-06 2.97e-06 9.82e-06 1.7e-06 1.1e-06 3.98e-06 2.6e-06 3.93e-06 1.49e-06 1.48e-06 2.8e-06 5.66e-06 4.68e-06 1.86e-06 9.02e-06 2.08e-06 2.29e-06 1.78e-06 5.6e-06 6.62e-06 2.59e-06 4.17e-07 6.95e-07 2.34e-06 1.89e-06 1.35e-06 1.11e-06 4.66e-07 9.67e-07 6.24e-07 7.83e-07 8.12e-06 4.9e-07 1.66e-07 7.72e-07 1.2e-06 9.77e-07 7.35e-07 4.38e-07
ENSG00000117000 RLF 21082 1.6e-05 1.56e-05 3.02e-06 9.91e-06 3.22e-06 8.49e-06 2.2e-05 3.29e-06 1.64e-05 8.01e-06 2.11e-05 8.22e-06 3.03e-05 6.34e-06 4.93e-06 1.01e-05 9.14e-06 1.53e-05 4.64e-06 4.32e-06 8.43e-06 1.67e-05 1.71e-05 5.76e-06 2.77e-05 5.36e-06 8.03e-06 7.33e-06 1.77e-05 1.89e-05 1.14e-05 1.24e-06 1.74e-06 5.28e-06 7.51e-06 4.46e-06 2.54e-06 2.7e-06 3.56e-06 2.66e-06 1.72e-06 2.19e-05 2.56e-06 3.66e-07 1.93e-06 2.63e-06 3.33e-06 1.3e-06 1.01e-06
ENSG00000117016 \N -483213 3.92e-07 2.17e-07 6.28e-08 2.41e-07 1.07e-07 1.08e-07 2.95e-07 6.57e-08 1.96e-07 1.11e-07 2.38e-07 1.82e-07 3.6e-07 8.55e-08 6.27e-08 1.06e-07 6.63e-08 2.21e-07 7.42e-08 6.73e-08 1.27e-07 1.98e-07 1.89e-07 3.83e-08 3.14e-07 1.71e-07 1.25e-07 1.47e-07 1.44e-07 1.85e-07 1.39e-07 4.69e-08 4.86e-08 9.98e-08 7.55e-08 3.94e-08 5.26e-08 7.68e-08 6.29e-08 7.65e-08 4.83e-08 2.41e-07 3.4e-08 2.06e-08 3.34e-08 6.39e-09 7.66e-08 0.0 4.98e-08
ENSG00000131238 PPT1 84742 5.14e-06 5.13e-06 7.94e-07 3.18e-06 1.7e-06 1.52e-06 5.71e-06 1.07e-06 5.06e-06 2.44e-06 6.19e-06 3.34e-06 8.41e-06 2.08e-06 1.33e-06 3.71e-06 1.94e-06 3.95e-06 1.5e-06 1.15e-06 2.78e-06 4.83e-06 4.69e-06 1.72e-06 8.26e-06 1.95e-06 2.43e-06 1.83e-06 4.43e-06 5.53e-06 2.79e-06 5.4e-07 4.82e-07 1.95e-06 2.07e-06 1.17e-06 1.04e-06 4.74e-07 8.26e-07 5.31e-07 7.35e-07 7.03e-06 4.38e-07 1.68e-07 6.1e-07 8.46e-07 1.16e-06 5.52e-07 3.43e-07
ENSG00000187801 \N -267638 1.29e-06 9.53e-07 2.1e-07 4.15e-07 2.31e-07 4.39e-07 1.13e-06 3.49e-07 1.13e-06 3.28e-07 1.35e-06 6.19e-07 1.82e-06 2.54e-07 4.3e-07 6.36e-07 7.93e-07 5.71e-07 3.66e-07 4.68e-07 3.24e-07 9.92e-07 8.03e-07 5.36e-07 1.94e-06 2.99e-07 6.16e-07 5.31e-07 9.39e-07 1.12e-06 5.48e-07 3.67e-08 1.78e-07 4.83e-07 4.25e-07 3.98e-07 3.79e-07 1.59e-07 1.33e-07 7.62e-08 2.58e-07 1.51e-06 6.75e-08 5.67e-08 1.81e-07 6.01e-08 1.6e-07 8.97e-08 5.25e-08
ENSG00000259943 AL050341.2 -75498 5.63e-06 5.68e-06 6.06e-07 3.41e-06 1.49e-06 1.52e-06 7.49e-06 1.15e-06 4.83e-06 2.8e-06 7.6e-06 2.9e-06 9.88e-06 1.65e-06 1.1e-06 3.99e-06 2.72e-06 3.84e-06 1.47e-06 1.5e-06 2.78e-06 5.77e-06 4.66e-06 1.89e-06 9.03e-06 2.1e-06 2.28e-06 1.78e-06 5.61e-06 6.62e-06 2.63e-06 4.34e-07 6.95e-07 2.34e-06 1.89e-06 1.38e-06 1.12e-06 5e-07 9.49e-07 6.39e-07 7.83e-07 8.12e-06 5.08e-07 1.66e-07 7.72e-07 1.18e-06 9.9e-07 7.05e-07 4.38e-07
ENSG00000261798 \N 393493 7.76e-07 4.78e-07 7.72e-08 3.57e-07 1.07e-07 1.71e-07 5.01e-07 9.69e-08 3.32e-07 1.78e-07 5.29e-07 3.3e-07 6.98e-07 1.01e-07 1.27e-07 1.84e-07 2.07e-07 3.39e-07 1.5e-07 9.01e-08 1.68e-07 2.99e-07 3.07e-07 1.25e-07 6.59e-07 2.36e-07 1.97e-07 1.97e-07 2.78e-07 4.51e-07 2.19e-07 7.91e-08 5.58e-08 1.23e-07 2.84e-07 6.94e-08 9.11e-08 6.78e-08 6.08e-08 5.54e-08 4.67e-08 4.55e-07 2.94e-08 1.04e-08 8.59e-08 9.12e-09 9.46e-08 3.2e-09 4.82e-08