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Genes within 1Mb (chr1:40182131:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 298620 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -135682 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -509517 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -162719 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 489949 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -76105 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 605341 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 490646 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 20744 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -349442 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 141898 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 84404 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -326610 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -797557 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -680232 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -267971 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -295159 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -75836 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -509935 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 298620 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -509517 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -162719 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 489949 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -76105 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 605341 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 393266 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 20744 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -349442 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 141898 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 84404 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -326610 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -797557 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -680232 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -295159 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -75836 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -509935 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 298620 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -135682 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -509517 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -162719 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 489949 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -76105 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 605341 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 393266 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 20744 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -349442 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 141898 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 84404 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -326610 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -797557 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -680232 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -295159 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 410783 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -75836 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -509935 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 298620 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -509517 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -162719 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 489949 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -76105 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 605341 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 393266 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 20744 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -349442 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 141898 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 84404 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -326610 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 227019 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -797557 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -680232 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -267971 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -295159 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 410783 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -75836 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -509935 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -509558 eQTL 0.0379 -0.0435 0.0209 0.00103 0.0 0.0486
ENSG00000116983 HPCAL4 490646 eQTL 0.0272 -0.0753 0.034 0.0 0.0 0.0486
ENSG00000117000 RLF 20744 eQTL 2.38e-14 0.201 0.0259 0.00337 0.00324 0.0486
ENSG00000117013 KCNQ4 -601656 eQTL 8.06e-03 -0.215 0.0811 0.0 0.0 0.0486
ENSG00000131238 PPT1 84404 eQTL 2.17e-27 0.706 0.0631 0.0 0.0 0.0486
ENSG00000164002 EXO5 -326610 eQTL 8.46e-03 -0.13 0.0493 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -75836 eQTL 5.55e-08 -0.246 0.0449 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -76105 5.92e-06 7.21e-06 9.85e-07 3.69e-06 1.89e-06 2.47e-06 8.88e-06 1.36e-06 4.88e-06 3.55e-06 8.28e-06 3.41e-06 1.01e-05 2.82e-06 1.47e-06 4.64e-06 3.62e-06 3.77e-06 2.19e-06 2.15e-06 3.2e-06 7.44e-06 5.37e-06 2.18e-06 9.55e-06 2.43e-06 3.64e-06 2.09e-06 6.73e-06 7.69e-06 3.29e-06 5.72e-07 8.28e-07 2.74e-06 2.54e-06 1.73e-06 1.19e-06 1.29e-06 1.32e-06 8.19e-07 8.59e-07 8.48e-06 8.79e-07 1.68e-07 6.85e-07 1.04e-06 8.95e-07 6.33e-07 5.64e-07
ENSG00000117000 RLF 20744 1.43e-05 1.6e-05 3.18e-06 9.8e-06 3.23e-06 7.76e-06 2.26e-05 3.25e-06 1.65e-05 8.28e-06 2.04e-05 7.98e-06 2.89e-05 6.86e-06 5.19e-06 9.88e-06 8.8e-06 1.43e-05 5.31e-06 4.62e-06 8.43e-06 1.65e-05 1.71e-05 5.93e-06 2.73e-05 5.5e-06 8e-06 7.64e-06 1.81e-05 1.97e-05 1.11e-05 1.4e-06 1.96e-06 5.37e-06 7.46e-06 4.48e-06 2.29e-06 2.74e-06 3.56e-06 2.66e-06 1.67e-06 2e-05 2.52e-06 3.57e-07 1.97e-06 2.84e-06 3.02e-06 1.35e-06 1.23e-06
ENSG00000117016 \N -483551 6.97e-07 3.47e-07 1.07e-07 3.19e-07 9.86e-08 2.01e-07 4.42e-07 1.31e-07 3.03e-07 2.14e-07 4.13e-07 3.27e-07 5.39e-07 1.07e-07 1.68e-07 1.76e-07 2.11e-07 3.39e-07 1.93e-07 1.43e-07 1.92e-07 3.13e-07 3.03e-07 1.25e-07 4.67e-07 2.33e-07 2.57e-07 2.01e-07 2.76e-07 5.17e-07 1.93e-07 6.7e-08 4.42e-08 1.19e-07 2.85e-07 8.17e-08 1.1e-07 1.09e-07 4.55e-08 5.12e-08 8.15e-08 2.91e-07 4.71e-08 1.75e-08 1.29e-07 1.33e-08 1.07e-07 2.44e-08 6.15e-08
ENSG00000131238 PPT1 84404 5.59e-06 5.83e-06 7.05e-07 3.36e-06 1.74e-06 1.71e-06 8.04e-06 1.29e-06 4.67e-06 3.16e-06 7.6e-06 2.95e-06 9.39e-06 2.17e-06 1.05e-06 3.93e-06 2.99e-06 3.72e-06 1.65e-06 1.69e-06 2.66e-06 6.41e-06 4.84e-06 2.01e-06 9.02e-06 2.34e-06 3.08e-06 1.73e-06 6.08e-06 6.7e-06 2.8e-06 4.88e-07 7.42e-07 2.44e-06 2.16e-06 1.46e-06 1.04e-06 8.34e-07 1.24e-06 7.47e-07 8.4e-07 7.41e-06 6.89e-07 1.66e-07 7.63e-07 7.62e-07 1.07e-06 6.91e-07 6.2e-07
ENSG00000187801 \N -267976 1.29e-06 1.01e-06 2.59e-07 1.07e-06 3.75e-07 5.98e-07 1.64e-06 3.97e-07 1.49e-06 6.18e-07 1.79e-06 7.79e-07 2.12e-06 2.87e-07 5.4e-07 9.33e-07 9e-07 7.19e-07 8.15e-07 5.27e-07 8.02e-07 1.75e-06 9.18e-07 5.66e-07 2.3e-06 6.01e-07 9.45e-07 7.45e-07 1.33e-06 1.21e-06 6.97e-07 3.04e-07 2.69e-07 6.83e-07 5.34e-07 4.42e-07 6.17e-07 3.07e-07 4.82e-07 3.13e-07 2.79e-07 1.46e-06 2.9e-07 5.71e-08 2.84e-07 2.17e-07 2.6e-07 1.41e-07 2.05e-07
ENSG00000259943 AL050341.2 -75836 5.92e-06 7.41e-06 9.85e-07 3.69e-06 1.87e-06 2.48e-06 8.99e-06 1.36e-06 4.86e-06 3.57e-06 8.3e-06 3.41e-06 1.02e-05 2.81e-06 1.47e-06 4.61e-06 3.7e-06 3.77e-06 2.2e-06 2.16e-06 3.25e-06 7.41e-06 5.44e-06 2.22e-06 9.63e-06 2.45e-06 3.62e-06 2.11e-06 6.77e-06 7.79e-06 3.28e-06 5.55e-07 8.43e-07 2.74e-06 2.56e-06 1.78e-06 1.19e-06 1.32e-06 1.32e-06 8.19e-07 8.59e-07 8.36e-06 8.79e-07 1.68e-07 6.7e-07 1.04e-06 8.95e-07 6.61e-07 5.78e-07
ENSG00000261798 \N 393155 1.05e-06 6.76e-07 1.87e-07 4.31e-07 1.18e-07 3.26e-07 6.09e-07 2.47e-07 6.27e-07 3.22e-07 9.39e-07 5.22e-07 9.65e-07 1.59e-07 3.58e-07 3.41e-07 5.56e-07 4.39e-07 3.36e-07 3.06e-07 2.26e-07 5.5e-07 4.06e-07 3.06e-07 1.02e-06 2.54e-07 4.7e-07 3.51e-07 5.16e-07 8.59e-07 3.67e-07 4.53e-08 9.89e-08 1.9e-07 3.46e-07 1.85e-07 1.38e-07 1.41e-07 8.24e-08 8.29e-09 1.3e-07 6.19e-07 5.65e-08 1.1e-08 1.89e-07 4.57e-08 1.62e-07 8.97e-08 6.27e-08