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Genes within 1Mb (chr1:40177254:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 293743 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -140559 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -514394 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -167596 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 485072 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -80982 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 600464 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 485769 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 15867 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -354319 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 137021 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 79527 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -331487 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -802434 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -685109 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -272848 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -300036 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -80713 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -514812 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 293743 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -514394 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -167596 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 485072 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -80982 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 600464 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 388389 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 15867 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -354319 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 137021 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 79527 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -331487 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -802434 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -685109 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -300036 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -80713 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -514812 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 293743 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -140559 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -514394 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -167596 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 485072 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -80982 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 600464 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 388389 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 15867 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -354319 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 137021 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 79527 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -331487 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -802434 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -685109 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -300036 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 405906 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -80713 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -514812 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 293743 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -514394 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -167596 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 485072 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -80982 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 600464 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 388389 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 15867 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -354319 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 137021 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 79527 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -331487 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 222142 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -802434 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -685109 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -272848 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -300036 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 405906 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -80713 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -514812 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -514435 eQTL 0.0445 -0.0419 0.0208 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 485769 eQTL 0.0263 -0.0754 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 15867 eQTL 2.25e-14 0.2 0.0258 0.00362 0.00342 0.0486
ENSG00000117013 KCNQ4 -606533 eQTL 8.16e-03 -0.214 0.0807 0.0 0.0 0.0486
ENSG00000131238 PPT1 79527 eQTL 1.43e-27 0.704 0.0627 0.0 0.0 0.0486
ENSG00000164002 EXO5 -331487 eQTL 9.73e-03 -0.127 0.0491 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -80713 eQTL 3.26e-08 -0.249 0.0447 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -80982 8.53e-06 9.35e-06 9.72e-07 3.92e-06 1.85e-06 3.86e-06 9.71e-06 1.27e-06 5.33e-06 3.77e-06 8.9e-06 3.74e-06 1.11e-05 3.5e-06 1.55e-06 4.81e-06 3.69e-06 3.94e-06 1.92e-06 1.79e-06 3.16e-06 7.44e-06 5.57e-06 1.95e-06 1.09e-05 2.21e-06 3.61e-06 2.13e-06 6.69e-06 7.69e-06 4.02e-06 4.16e-07 7.87e-07 2.1e-06 2.59e-06 1.68e-06 1.07e-06 6.03e-07 9.82e-07 7.31e-07 5.19e-07 9.58e-06 1.31e-06 1.56e-07 7.63e-07 9.44e-07 1.03e-06 7.05e-07 4.67e-07
ENSG00000117000 RLF 15867 3.75e-05 2.96e-05 4.66e-06 1.41e-05 4.91e-06 1.36e-05 3.84e-05 3.72e-06 2.55e-05 1.33e-05 3.19e-05 1.38e-05 4.19e-05 1.17e-05 6.24e-06 1.48e-05 1.47e-05 2.21e-05 6.95e-06 5.45e-06 1.24e-05 2.86e-05 2.63e-05 7.73e-06 3.83e-05 6.55e-06 1.11e-05 1e-05 2.61e-05 2.19e-05 1.69e-05 1.65e-06 2.22e-06 5.65e-06 1.04e-05 5.11e-06 2.68e-06 2.96e-06 4.1e-06 3.08e-06 1.66e-06 3.32e-05 3.24e-06 2.96e-07 2.07e-06 3.23e-06 3.74e-06 1.49e-06 1.38e-06
ENSG00000117016 \N -488428 3.71e-07 2.4e-07 6.41e-08 2.57e-07 1.01e-07 1.25e-07 2.4e-07 6.12e-08 1.71e-07 9.72e-08 1.83e-07 1.31e-07 2.38e-07 8.44e-08 6.27e-08 9.48e-08 5.57e-08 2.04e-07 7.53e-08 6.58e-08 1.24e-07 1.9e-07 1.75e-07 4.07e-08 2.59e-07 1.56e-07 1.29e-07 1.28e-07 1.32e-07 1.69e-07 1.26e-07 3.9e-08 4.74e-08 1.02e-07 1.07e-07 3.24e-08 6.57e-08 6.32e-08 4.99e-08 8.61e-08 4.36e-08 1.68e-07 3.2e-08 1.88e-08 3.32e-08 9.86e-09 8.98e-08 2.07e-09 4.94e-08
ENSG00000131238 PPT1 79527 8.64e-06 9.51e-06 9.83e-07 4.07e-06 1.89e-06 3.97e-06 9.59e-06 1.28e-06 5.53e-06 4.05e-06 9.01e-06 4.03e-06 1.13e-05 3.61e-06 1.66e-06 5.06e-06 3.65e-06 4.08e-06 2.02e-06 1.98e-06 3.16e-06 7.71e-06 5.99e-06 1.95e-06 1.12e-05 2.41e-06 3.58e-06 2.2e-06 6.73e-06 7.83e-06 4.17e-06 4.31e-07 7.82e-07 2.18e-06 2.82e-06 1.73e-06 1.03e-06 6.94e-07 1.12e-06 8.18e-07 5.82e-07 9.93e-06 1.25e-06 1.55e-07 7.73e-07 9.38e-07 1.02e-06 6.58e-07 5.13e-07
ENSG00000187801 \N -272853 1.32e-06 1.01e-06 2.81e-07 6.94e-07 1.78e-07 4.76e-07 9.92e-07 2.65e-07 9.02e-07 2.77e-07 1.25e-06 6.07e-07 1.48e-06 2.54e-07 4.43e-07 5.87e-07 7.74e-07 5.67e-07 4.24e-07 4.68e-07 2.86e-07 9.92e-07 6.93e-07 4.79e-07 1.93e-06 2.94e-07 6.37e-07 4.92e-07 7.07e-07 1.1e-06 5.1e-07 3.28e-08 1.75e-07 3.17e-07 4.05e-07 3.21e-07 4.13e-07 1.53e-07 1.51e-07 9.03e-08 1.22e-07 1.44e-06 5e-08 5.67e-08 2.03e-07 7.7e-08 1.47e-07 4.41e-08 6.23e-08
ENSG00000259943 AL050341.2 -80713 8.56e-06 9.42e-06 9.7e-07 3.95e-06 1.82e-06 3.86e-06 9.67e-06 1.29e-06 5.38e-06 3.75e-06 8.9e-06 3.84e-06 1.12e-05 3.5e-06 1.57e-06 4.82e-06 3.68e-06 3.95e-06 1.9e-06 1.8e-06 3.12e-06 7.46e-06 5.59e-06 1.92e-06 1.1e-05 2.25e-06 3.64e-06 2.13e-06 6.75e-06 7.69e-06 4.06e-06 4.15e-07 8.05e-07 2.16e-06 2.69e-06 1.71e-06 1.08e-06 6.18e-07 1.05e-06 7.31e-07 5.18e-07 9.58e-06 1.29e-06 1.56e-07 7.63e-07 9.43e-07 1.04e-06 6.9e-07 4.98e-07
ENSG00000261798 \N 388278 7.76e-07 5.67e-07 1.05e-07 3.95e-07 1.05e-07 2.16e-07 4.25e-07 8.37e-08 2.66e-07 1.65e-07 4.13e-07 2.33e-07 4.88e-07 1.07e-07 1.45e-07 1.76e-07 2.11e-07 3.12e-07 1.7e-07 1.17e-07 1.61e-07 3.13e-07 2.81e-07 1.06e-07 6.59e-07 2.33e-07 2.24e-07 1.88e-07 2.11e-07 4.61e-07 2.11e-07 5.46e-08 5.77e-08 1.17e-07 3.04e-07 6.85e-08 1.05e-07 7.98e-08 4.55e-08 2.53e-08 3.6e-08 4.16e-07 4.12e-08 5.8e-09 6.59e-08 1.91e-08 9.19e-08 2.75e-09 4.66e-08