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Genes within 1Mb (chr1:40175338:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 291827 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -142475 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -516310 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -169512 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 483156 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -82898 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 598548 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 483853 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 13951 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -356235 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 135105 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 77611 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -333403 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -804350 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -687025 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -274764 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -301952 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -82629 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -516728 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 291827 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -516310 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -169512 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 483156 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -82898 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 598548 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 386473 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 13951 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -356235 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 135105 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 77611 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -333403 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -804350 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -687025 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -301952 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -82629 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -516728 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 291827 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -142475 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -516310 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -169512 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 483156 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -82898 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 598548 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 386473 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 13951 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -356235 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 135105 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 77611 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -333403 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -804350 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -687025 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -301952 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 403990 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -82629 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -516728 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 291827 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -516310 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -169512 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 483156 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -82898 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 598548 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 386473 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 13951 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -356235 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 135105 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 77611 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -333403 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 220226 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -804350 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -687025 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -274764 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -301952 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 403990 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -82629 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -516728 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -516351 eQTL 0.0454 -0.0417 0.0208 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 483853 eQTL 0.0259 -0.0756 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 13951 eQTL 2.18e-14 0.2 0.0258 0.00371 0.00351 0.0486
ENSG00000117013 KCNQ4 -608449 eQTL 8.20e-03 -0.214 0.0807 0.0 0.0 0.0486
ENSG00000131238 PPT1 77611 eQTL 1.44e-27 0.705 0.0627 0.0 0.0 0.0486
ENSG00000164002 EXO5 -333403 eQTL 1.02e-02 -0.126 0.0491 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -82629 eQTL 3.21e-08 -0.249 0.0447 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -82898 5.53e-06 6.3e-06 8.44e-07 3.52e-06 1.87e-06 2.03e-06 8.67e-06 1.36e-06 4.88e-06 3.43e-06 8.15e-06 3.25e-06 1.01e-05 2.32e-06 1.29e-06 4.63e-06 3.12e-06 3.77e-06 2.11e-06 2.15e-06 3.2e-06 7.2e-06 5.37e-06 2.46e-06 9.11e-06 2.38e-06 3.47e-06 2.09e-06 6.69e-06 7.18e-06 3.4e-06 5.87e-07 7.68e-07 2.77e-06 2.42e-06 2.04e-06 1.43e-06 9.82e-07 1.36e-06 8.87e-07 1.01e-06 8.39e-06 6.86e-07 1.35e-07 7.38e-07 9.57e-07 9.03e-07 6.45e-07 5.77e-07
ENSG00000117000 RLF 13951 1.98e-05 2.15e-05 5.05e-06 1.31e-05 4.86e-06 1.15e-05 3.16e-05 3.8e-06 2.12e-05 1.1e-05 2.74e-05 1.11e-05 3.8e-05 9.51e-06 5.81e-06 1.33e-05 1.3e-05 2.02e-05 7.56e-06 6.43e-06 1.19e-05 2.33e-05 2.34e-05 9.41e-06 3.43e-05 6.6e-06 9.65e-06 9.23e-06 2.52e-05 2.85e-05 1.35e-05 1.64e-06 2.75e-06 7.77e-06 9.74e-06 5.78e-06 3.52e-06 3.18e-06 5.26e-06 3.56e-06 1.8e-06 2.75e-05 2.75e-06 4.64e-07 2.59e-06 3.41e-06 3.79e-06 1.69e-06 1.54e-06
ENSG00000117016 \N -490344 7.57e-07 3.77e-07 1.05e-07 3.57e-07 9.26e-08 1.74e-07 4.93e-07 1.37e-07 3.94e-07 2.26e-07 4.97e-07 3.48e-07 6.27e-07 1.07e-07 1.68e-07 2.05e-07 2.48e-07 3.58e-07 1.69e-07 1.3e-07 1.91e-07 3.34e-07 3.07e-07 1.34e-07 6.02e-07 2.39e-07 2.57e-07 2.19e-07 2.84e-07 4.27e-07 2.19e-07 7.5e-08 5.58e-08 1.39e-07 3.04e-07 7.98e-08 1.03e-07 7.75e-08 3.82e-08 5.54e-08 8.29e-08 3.55e-07 2.71e-08 1.76e-08 1.1e-07 1.88e-08 1.03e-07 1.18e-08 5.54e-08
ENSG00000131238 PPT1 77611 5.97e-06 7.17e-06 9.77e-07 3.81e-06 2.18e-06 2.51e-06 8.96e-06 1.51e-06 5.33e-06 4.01e-06 8.9e-06 3.57e-06 1.07e-05 2.8e-06 1.55e-06 5.06e-06 3.81e-06 3.89e-06 2.15e-06 2.44e-06 3.52e-06 7.55e-06 5.73e-06 2.87e-06 9.69e-06 2.66e-06 3.64e-06 2.34e-06 6.95e-06 7.83e-06 3.51e-06 7.91e-07 8.76e-07 2.93e-06 2.6e-06 2.12e-06 1.55e-06 1.3e-06 1.56e-06 9.87e-07 1.01e-06 8.2e-06 8.3e-07 1.61e-07 7.07e-07 1.01e-06 1.02e-06 7.2e-07 5.08e-07
ENSG00000187801 \N -274769 1.27e-06 1e-06 2.14e-07 1.14e-06 3.83e-07 6.38e-07 1.59e-06 4.13e-07 1.47e-06 5.99e-07 1.89e-06 8.15e-07 2.34e-06 2.63e-07 5.32e-07 9.78e-07 9.23e-07 7.83e-07 8.83e-07 5.23e-07 8.02e-07 1.69e-06 9.11e-07 5.58e-07 2.19e-06 6.73e-07 9.28e-07 8.64e-07 1.47e-06 1.28e-06 6.73e-07 3.03e-07 2.54e-07 6.19e-07 5.49e-07 4.6e-07 6.81e-07 2.74e-07 4.82e-07 2.79e-07 2.71e-07 1.56e-06 1.22e-07 8.06e-08 3.07e-07 1.47e-07 2.46e-07 6.08e-08 1.68e-07
ENSG00000259943 AL050341.2 -82629 5.53e-06 6.26e-06 8.44e-07 3.52e-06 1.87e-06 2.03e-06 8.67e-06 1.46e-06 4.86e-06 3.39e-06 8.15e-06 3.3e-06 1.02e-05 2.37e-06 1.32e-06 4.67e-06 3.09e-06 3.78e-06 2.11e-06 2.15e-06 3.25e-06 7.11e-06 5.37e-06 2.56e-06 9.25e-06 2.38e-06 3.53e-06 2.09e-06 6.75e-06 7.18e-06 3.4e-06 5.87e-07 8e-07 2.77e-06 2.42e-06 2.04e-06 1.4e-06 9.96e-07 1.34e-06 8.7e-07 1.01e-06 8.42e-06 6.85e-07 1.35e-07 7.51e-07 9.55e-07 9.03e-07 6.45e-07 5.77e-07
ENSG00000261798 \N 386362 1.26e-06 7.98e-07 2.06e-07 4.25e-07 1.38e-07 3.41e-07 6.87e-07 2.65e-07 8.29e-07 2.85e-07 1.07e-06 5.45e-07 1.16e-06 1.98e-07 3.94e-07 4.29e-07 6.29e-07 4.72e-07 3.36e-07 3.31e-07 2.53e-07 5.66e-07 5.21e-07 3.56e-07 1.38e-06 2.4e-07 4.91e-07 4.11e-07 6.33e-07 8.48e-07 4.02e-07 4.44e-08 9.36e-08 2.72e-07 3.29e-07 2.78e-07 1.89e-07 1.24e-07 1.01e-07 8.85e-09 1.92e-07 7.22e-07 6.24e-08 5.83e-09 1.89e-07 4.28e-08 1.83e-07 8.16e-08 5.47e-08