logo

Genes within 1Mb (chr1:40172082:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 288571 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -145731 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -519566 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -172768 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 479900 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -86154 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 595292 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 480597 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 10695 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -359491 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 131849 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 74355 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -336659 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -807606 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -690281 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -278020 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -305208 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -85885 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -519984 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 288571 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -519566 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -172768 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 479900 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -86154 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 595292 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 383217 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 10695 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -359491 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 131849 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 74355 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -336659 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -807606 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -690281 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -305208 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -85885 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -519984 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 288571 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -145731 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -519566 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -172768 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 479900 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -86154 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 595292 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 383217 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 10695 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -359491 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 131849 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 74355 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -336659 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -807606 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -690281 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -305208 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 400734 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -85885 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -519984 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 288571 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -519566 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -172768 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 479900 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -86154 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 595292 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 383217 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 10695 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -359491 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 131849 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 74355 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -336659 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 216970 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -807606 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -690281 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -278020 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -305208 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 400734 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -85885 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -519984 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -519607 eQTL 0.0447 -0.0418 0.0208 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 480597 eQTL 0.0264 -0.0753 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 10695 eQTL 2.21e-14 0.2 0.0258 0.00367 0.00347 0.0486
ENSG00000117013 KCNQ4 -611705 eQTL 8.16e-03 -0.214 0.0807 0.0 0.0 0.0486
ENSG00000131238 PPT1 74355 eQTL 1.39e-27 0.704 0.0627 0.0 0.0 0.0486
ENSG00000164002 EXO5 -336659 eQTL 9.84e-03 -0.127 0.0491 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -85885 eQTL 3.32e-08 -0.249 0.0447 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -86154 1.16e-05 1.26e-05 1.28e-06 6.77e-06 2.42e-06 4.24e-06 1.19e-05 1.86e-06 1.03e-05 5.32e-06 1.29e-05 5.85e-06 1.71e-05 4.08e-06 2.91e-06 6.63e-06 5.38e-06 9.3e-06 2.7e-06 2.68e-06 5.79e-06 1.06e-05 8.72e-06 3.17e-06 1.6e-05 3.89e-06 5.16e-06 4.83e-06 1.07e-05 8.46e-06 6.53e-06 9.42e-07 1.27e-06 2.98e-06 4.55e-06 2.14e-06 1.78e-06 1.84e-06 1.59e-06 1.02e-06 8.6e-07 1.51e-05 1.49e-06 1.66e-07 7.51e-07 1.63e-06 1.47e-06 7.01e-07 6.22e-07
ENSG00000117000 RLF 10695 3.69e-05 3.29e-05 6.26e-06 1.55e-05 5.91e-06 1.44e-05 4.47e-05 4.55e-06 3.08e-05 1.55e-05 3.78e-05 1.77e-05 4.8e-05 1.42e-05 7.03e-06 1.9e-05 1.77e-05 2.54e-05 7.63e-06 6.66e-06 1.52e-05 3.34e-05 3.24e-05 8.82e-06 4.38e-05 7.99e-06 1.42e-05 1.29e-05 3.19e-05 2.53e-05 1.98e-05 1.64e-06 2.6e-06 7.07e-06 1.16e-05 5.77e-06 3.13e-06 3.16e-06 4.58e-06 3.3e-06 1.76e-06 3.84e-05 3.68e-06 3.57e-07 2.48e-06 3.86e-06 4.08e-06 1.6e-06 1.52e-06
ENSG00000117016 \N -493600 7.57e-07 4.63e-07 6.72e-08 3.48e-07 1.06e-07 1.57e-07 4.25e-07 7.12e-08 2.76e-07 1.78e-07 3.92e-07 2.11e-07 6.27e-07 1.1e-07 1.01e-07 1.33e-07 1.18e-07 3.3e-07 1.27e-07 8.69e-08 1.57e-07 2.63e-07 2.63e-07 4.81e-08 4.88e-07 1.94e-07 1.39e-07 1.77e-07 2.13e-07 2.97e-07 1.95e-07 3.9e-08 4.98e-08 1.15e-07 2.15e-07 3.94e-08 6.95e-08 7.25e-08 5.69e-08 6.79e-08 5.28e-08 4.35e-07 2.75e-08 1.85e-08 3.61e-08 8.07e-09 9.1e-08 0.0 4.98e-08
ENSG00000131238 PPT1 74355 1.36e-05 1.39e-05 1.56e-06 7.82e-06 2.48e-06 5.16e-06 1.51e-05 2.11e-06 1.18e-05 6.13e-06 1.5e-05 6.53e-06 2.01e-05 4.75e-06 3.67e-06 7.03e-06 6.4e-06 1.08e-05 3.07e-06 2.83e-06 6.5e-06 1.21e-05 1.03e-05 3.3e-06 2e-05 4.36e-06 6.5e-06 5.26e-06 1.26e-05 9.87e-06 7.65e-06 1.07e-06 1.09e-06 3.35e-06 5.11e-06 2.7e-06 1.79e-06 1.83e-06 2.13e-06 1e-06 1.03e-06 1.71e-05 1.61e-06 1.59e-07 8.22e-07 1.74e-06 1.73e-06 7.55e-07 5.24e-07
ENSG00000187801 \N -278025 1.65e-06 2.16e-06 2.63e-07 1.27e-06 3.47e-07 6.47e-07 1.23e-06 3.98e-07 1.69e-06 6.94e-07 2.07e-06 9.29e-07 2.68e-06 6.19e-07 4.87e-07 9.67e-07 1.01e-06 1.17e-06 6.6e-07 6.56e-07 7.69e-07 1.98e-06 1.18e-06 5.43e-07 2.34e-06 6.95e-07 9.31e-07 8.86e-07 1.62e-06 1.29e-06 8.51e-07 7.37e-08 2.62e-07 6.58e-07 6.46e-07 4.44e-07 6.86e-07 1.68e-07 3.95e-07 2.45e-07 2.36e-07 2.51e-06 3.73e-07 8.06e-08 1.69e-07 1.12e-07 2.6e-07 5.32e-08 8.28e-08
ENSG00000259943 AL050341.2 -85885 1.16e-05 1.27e-05 1.29e-06 6.84e-06 2.4e-06 4.34e-06 1.19e-05 1.86e-06 1.03e-05 5.4e-06 1.3e-05 5.85e-06 1.71e-05 4.11e-06 3.01e-06 6.63e-06 5.38e-06 9.3e-06 2.66e-06 2.69e-06 5.81e-06 1.06e-05 8.72e-06 3.2e-06 1.61e-05 3.9e-06 5.16e-06 4.83e-06 1.07e-05 8.53e-06 6.63e-06 9.42e-07 1.25e-06 2.94e-06 4.62e-06 2.14e-06 1.76e-06 1.84e-06 1.6e-06 1.02e-06 8.81e-07 1.51e-05 1.49e-06 1.59e-07 7.51e-07 1.68e-06 1.47e-06 7.14e-07 6.21e-07
ENSG00000261798 \N 383106 1.25e-06 9.03e-07 1.23e-07 3.96e-07 1.18e-07 3.18e-07 7.99e-07 1.65e-07 8.29e-07 2.72e-07 1.07e-06 5.35e-07 1.46e-06 2.54e-07 3.58e-07 3.68e-07 6.37e-07 5.27e-07 3.51e-07 2.02e-07 2.53e-07 6.2e-07 5.63e-07 2.29e-07 1.54e-06 2.49e-07 4.16e-07 4.23e-07 6.76e-07 8.89e-07 4.61e-07 7.4e-08 5.37e-08 1.9e-07 3.29e-07 1.21e-07 1.94e-07 8.15e-08 6.41e-08 2.56e-08 3.43e-08 1.26e-06 7.6e-08 1.23e-08 1.25e-07 1.55e-08 1.18e-07 2.38e-08 5.44e-08