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Genes within 1Mb (chr1:40171691:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 288180 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -146122 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -519957 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -173159 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 479509 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -86545 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 594901 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 480206 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 10304 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -359882 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 131458 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 73964 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -337050 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -807997 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -690672 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -278411 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -305599 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -86276 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -520375 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 288180 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -519957 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -173159 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 479509 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -86545 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 594901 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 382826 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 10304 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -359882 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 131458 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 73964 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -337050 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -807997 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -690672 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -305599 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -86276 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -520375 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 288180 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -146122 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -519957 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -173159 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 479509 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -86545 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 594901 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 382826 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 10304 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -359882 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 131458 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 73964 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -337050 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -807997 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -690672 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -305599 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 400343 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -86276 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -520375 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 288180 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -519957 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -173159 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 479509 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -86545 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 594901 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 382826 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 10304 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -359882 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 131458 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 73964 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -337050 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 216579 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -807997 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -690672 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -278411 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -305599 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 400343 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -86276 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -520375 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -519998 eQTL 0.0447 -0.0418 0.0208 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 480206 eQTL 0.0264 -0.0753 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 10304 eQTL 2.21e-14 0.2 0.0258 0.00367 0.00347 0.0486
ENSG00000117013 KCNQ4 -612096 eQTL 8.16e-03 -0.214 0.0807 0.0 0.0 0.0486
ENSG00000131238 PPT1 73964 eQTL 1.39e-27 0.704 0.0627 0.0 0.0 0.0486
ENSG00000164002 EXO5 -337050 eQTL 9.84e-03 -0.127 0.0491 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -86276 eQTL 3.32e-08 -0.249 0.0447 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -86545 1.4e-05 1.25e-05 1.87e-06 7.23e-06 1.92e-06 5.65e-06 1.19e-05 1.28e-06 1.03e-05 4.92e-06 1.39e-05 4.99e-06 2.09e-05 3.88e-06 2.82e-06 6.33e-06 4.74e-06 8.09e-06 2.68e-06 2.58e-06 5.19e-06 1.04e-05 8.93e-06 3.3e-06 1.75e-05 2.97e-06 4.73e-06 3.39e-06 1.3e-05 8.96e-06 6.33e-06 9.54e-07 8.76e-07 3.24e-06 4.27e-06 2.14e-06 1.57e-06 1.46e-06 2.19e-06 9.71e-07 6.17e-07 1.7e-05 1.38e-06 1.64e-07 7.41e-07 1.61e-06 1.39e-06 6.45e-07 5.65e-07
ENSG00000117000 RLF 10304 4.29e-05 2.95e-05 5.89e-06 1.42e-05 4.07e-06 1.44e-05 3.66e-05 3.59e-06 2.67e-05 1.23e-05 3.16e-05 1.26e-05 4.29e-05 1.15e-05 5.88e-06 1.5e-05 1.34e-05 2.28e-05 7.02e-06 5.37e-06 1.24e-05 2.81e-05 2.67e-05 7.57e-06 3.68e-05 6.43e-06 1.06e-05 9.35e-06 2.8e-05 2.21e-05 1.66e-05 1.62e-06 2.22e-06 6.27e-06 9.3e-06 4.55e-06 2.6e-06 2.83e-06 3.74e-06 2.82e-06 1.58e-06 3.45e-05 2.99e-06 2.64e-07 2.11e-06 2.75e-06 3.77e-06 1.43e-06 1.28e-06
ENSG00000117016 \N -493991 1.29e-06 9.09e-07 3.02e-07 9.36e-07 1.06e-07 4.76e-07 8.36e-07 7.79e-08 6.53e-07 2.87e-07 1.08e-06 3.73e-07 1.57e-06 2.29e-07 4.05e-07 2.89e-07 4.29e-07 4.11e-07 2.88e-07 1.39e-07 2.57e-07 6.91e-07 6.1e-07 2.27e-07 1.54e-06 2.42e-07 4.68e-07 2.68e-07 6.84e-07 7.6e-07 3.93e-07 5.25e-08 4.49e-08 5.24e-07 4.25e-07 7.68e-08 2.04e-07 1.46e-07 3.78e-07 4.15e-08 8.55e-08 1.57e-06 5.65e-08 2.06e-07 8.45e-08 1.12e-07 1.24e-07 3.05e-08 5.54e-08
ENSG00000131238 PPT1 73964 1.51e-05 1.38e-05 2.41e-06 8.01e-06 2.17e-06 6.12e-06 1.38e-05 1.64e-06 1.12e-05 5.31e-06 1.54e-05 5.61e-06 2.36e-05 4.25e-06 3.35e-06 6.75e-06 5.57e-06 9.79e-06 2.99e-06 2.79e-06 5.94e-06 1.14e-05 1.03e-05 3.24e-06 2.05e-05 3.52e-06 5.85e-06 3.88e-06 1.42e-05 1.03e-05 7.59e-06 9.96e-07 1.33e-06 3.53e-06 4.61e-06 2.28e-06 1.73e-06 1.84e-06 2.08e-06 1.04e-06 7.35e-07 1.85e-05 1.57e-06 1.59e-07 7.65e-07 1.64e-06 1.76e-06 7.58e-07 5.09e-07
ENSG00000187801 \N -278416 3.39e-06 3.13e-06 6.94e-07 2.14e-06 4.2e-07 1.03e-06 2.12e-06 3.85e-07 1.74e-06 7.7e-07 2.47e-06 1.28e-06 5.05e-06 1.4e-06 9.32e-07 1.23e-06 9.63e-07 1.57e-06 6.74e-07 5.67e-07 7.78e-07 3.02e-06 2.46e-06 9.4e-07 4.05e-06 7.94e-07 1.21e-06 9.81e-07 2.54e-06 1.64e-06 1.67e-06 4.53e-07 3.32e-07 1.31e-06 1.54e-06 5.58e-07 8.29e-07 4.47e-07 1.27e-06 3.57e-07 2.79e-07 4.74e-06 5.74e-07 1.8e-07 2.98e-07 3.54e-07 4.23e-07 2.31e-07 2.87e-07
ENSG00000259943 AL050341.2 -86276 1.4e-05 1.26e-05 1.87e-06 7.23e-06 1.92e-06 5.69e-06 1.19e-05 1.28e-06 1.03e-05 4.92e-06 1.39e-05 4.99e-06 2.13e-05 3.88e-06 2.82e-06 6.33e-06 4.74e-06 8.09e-06 2.65e-06 2.58e-06 5.19e-06 1.04e-05 8.93e-06 3.3e-06 1.75e-05 2.93e-06 4.67e-06 3.37e-06 1.3e-05 8.96e-06 6.28e-06 9.54e-07 8.75e-07 3.29e-06 4.27e-06 2.12e-06 1.57e-06 1.49e-06 2.19e-06 1.02e-06 6.17e-07 1.7e-05 1.38e-06 1.64e-07 7.55e-07 1.61e-06 1.39e-06 6.45e-07 5.65e-07
ENSG00000261798 \N 382715 1.28e-06 1.27e-06 2.53e-07 1.43e-06 1.79e-07 6.74e-07 1.5e-06 2.03e-07 1.41e-06 4.24e-07 1.81e-06 5.71e-07 2.72e-06 2.82e-07 5.1e-07 7.95e-07 8.13e-07 5.82e-07 7.55e-07 4.68e-07 6.17e-07 1.72e-06 9.97e-07 6.37e-07 2.28e-06 2.9e-07 8.99e-07 5.31e-07 1.44e-06 1.26e-06 7.03e-07 2.52e-07 1.76e-07 5.59e-07 6.04e-07 3.47e-07 6.41e-07 3.37e-07 6.78e-07 2.99e-07 2.12e-07 2.41e-06 3.34e-07 1.93e-07 2.03e-07 2.95e-07 2.08e-07 5.28e-08 6.58e-08