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Genes within 1Mb (chr1:40163150:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 279639 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -154663 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -528498 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -181700 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 470968 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -95086 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 586360 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 471665 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 1763 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -368423 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 122917 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 65423 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -345591 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -816538 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -699213 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -286952 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -314140 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -94817 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -528916 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 279639 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -528498 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -181700 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 470968 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -95086 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 586360 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 374285 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 1763 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -368423 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 122917 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 65423 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -345591 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -816538 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -699213 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -314140 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -94817 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -528916 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 279639 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -154663 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -528498 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -181700 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 470968 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -95086 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 586360 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 374285 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 1763 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -368423 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 122917 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 65423 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -345591 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -816538 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -699213 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -314140 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 391802 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -94817 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -528916 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 279639 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -528498 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -181700 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 470968 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -95086 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 586360 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 374285 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 1763 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -368423 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 122917 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 65423 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -345591 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 208038 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -816538 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -699213 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -286952 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -314140 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 391802 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -94817 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -528916 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -528539 eQTL 0.0444 -0.0419 0.0208 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 471665 eQTL 0.0263 -0.0753 0.0338 0.0 0.0 0.0486
ENSG00000117000 RLF 1763 eQTL 2.23e-14 0.2 0.0257 0.00365 0.00345 0.0486
ENSG00000117013 KCNQ4 -620637 eQTL 8.02e-03 -0.214 0.0806 0.0 0.0 0.0486
ENSG00000131238 PPT1 65423 eQTL 1.37e-27 0.704 0.0626 0.0 0.0 0.0486
ENSG00000164002 EXO5 -345591 eQTL 9.86e-03 -0.127 0.049 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -94817 eQTL 3.34e-08 -0.249 0.0446 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -95086 5.61e-06 9.42e-06 1.36e-06 4.25e-06 1.66e-06 1.85e-06 8.84e-06 1.21e-06 5.68e-06 4.01e-06 9.2e-06 4.15e-06 1.14e-05 3.86e-06 1.69e-06 4.64e-06 3.7e-06 3.84e-06 1.63e-06 2.23e-06 3.12e-06 7.5e-06 5.56e-06 1.91e-06 9.69e-06 2.4e-06 3.58e-06 1.86e-06 6.69e-06 7.61e-06 4.33e-06 5.77e-07 7.92e-07 2.15e-06 2.54e-06 1.55e-06 1.04e-06 7.41e-07 1.24e-06 6.1e-07 4.48e-07 1e-05 1.04e-06 1.58e-07 8.11e-07 8.79e-07 9.9e-07 6.8e-07 5.49e-07
ENSG00000117000 RLF 1763 5.95e-05 5.13e-05 1.22e-05 2.48e-05 1.1e-05 2.49e-05 7.29e-05 9.34e-06 6.17e-05 3.28e-05 8.46e-05 3.17e-05 8.55e-05 2.56e-05 1.37e-05 4.06e-05 3.45e-05 4.58e-05 1.4e-05 1.41e-05 3.17e-05 6.84e-05 5.48e-05 1.82e-05 7.9e-05 1.88e-05 2.6e-05 2.63e-05 5.49e-05 4.92e-05 4.06e-05 4.89e-06 7.51e-06 1.18e-05 2.16e-05 1.08e-05 6.88e-06 7.45e-06 9.93e-06 5.41e-06 2.81e-06 5.65e-05 6.31e-06 1.11e-06 5.98e-06 8.83e-06 8.42e-06 4.31e-06 3.52e-06
ENSG00000117016 \N -502532 2.76e-07 1.83e-07 6.57e-08 2.27e-07 1.03e-07 8.45e-08 2.4e-07 5.43e-08 1.44e-07 6.4e-08 1.63e-07 1.11e-07 1.87e-07 8.55e-08 5.36e-08 7.89e-08 5.27e-08 1.72e-07 7.09e-08 5.07e-08 1.22e-07 1.42e-07 1.62e-07 3.17e-08 1.98e-07 1.26e-07 1.22e-07 1.04e-07 1.31e-07 1.85e-07 1.22e-07 4.51e-08 3.73e-08 8.72e-08 3.4e-08 2.68e-08 5.62e-08 8.68e-08 5.95e-08 5.45e-08 5.44e-08 1.6e-07 3.02e-08 1.11e-08 3.32e-08 1.65e-08 1.21e-07 1.96e-09 4.9e-08
ENSG00000131238 PPT1 65423 9.25e-06 1.26e-05 1.89e-06 6.74e-06 2.38e-06 4.24e-06 1.14e-05 2.16e-06 9.93e-06 5.42e-06 1.4e-05 5.88e-06 1.81e-05 3.96e-06 3.49e-06 6.63e-06 5.17e-06 7.74e-06 2.7e-06 2.79e-06 5.35e-06 1.02e-05 8.9e-06 3.2e-06 1.53e-05 3.9e-06 5.79e-06 3.97e-06 1.1e-05 9.09e-06 7.11e-06 9.59e-07 1.25e-06 2.98e-06 4.71e-06 2.53e-06 1.71e-06 1.89e-06 2e-06 9.95e-07 7.78e-07 1.51e-05 1.49e-06 1.49e-07 7.89e-07 1.77e-06 1.48e-06 8.43e-07 4.64e-07
ENSG00000187801 \N -286957 1.24e-06 9.73e-07 3.14e-07 7.35e-07 1.79e-07 3.12e-07 1.02e-06 2.64e-07 1.09e-06 3.09e-07 1.33e-06 5.81e-07 1.46e-06 2.88e-07 4.38e-07 4.84e-07 8.13e-07 5.53e-07 3.77e-07 4.52e-07 2.86e-07 8.58e-07 6.63e-07 3.56e-07 1.79e-06 2.8e-07 6.16e-07 4.92e-07 8.16e-07 1.24e-06 5.45e-07 3e-07 1.18e-07 2.31e-07 3e-07 3.22e-07 6.41e-07 1.53e-07 2.92e-07 4.09e-08 1.2e-07 1.51e-06 6.21e-08 3.38e-08 1.59e-07 5.38e-08 1.54e-07 9.04e-08 5.81e-08
ENSG00000259943 AL050341.2 -94817 5.61e-06 9.42e-06 1.34e-06 4.25e-06 1.66e-06 1.85e-06 8.88e-06 1.25e-06 5.77e-06 4.05e-06 9.2e-06 4.23e-06 1.13e-05 3.86e-06 1.69e-06 4.67e-06 3.7e-06 3.8e-06 1.66e-06 2.23e-06 3.08e-06 7.5e-06 5.56e-06 1.92e-06 9.69e-06 2.3e-06 3.57e-06 1.9e-06 6.75e-06 7.58e-06 4.35e-06 5.77e-07 7.9e-07 2.15e-06 2.54e-06 1.56e-06 1.04e-06 8.19e-07 1.29e-06 6.24e-07 4.32e-07 1e-05 1.04e-06 1.58e-07 7.95e-07 8.79e-07 9.59e-07 7.1e-07 5.64e-07
ENSG00000261798 \N 374174 4.89e-07 6.76e-07 1.5e-07 4.04e-07 1.07e-07 1.54e-07 5.28e-07 8.17e-08 3.17e-07 1.7e-07 4.97e-07 2.55e-07 5.81e-07 1.54e-07 2.07e-07 1.61e-07 4.29e-07 3.44e-07 1.62e-07 1.15e-07 1.76e-07 3.1e-07 3.03e-07 9.63e-08 6.18e-07 2.33e-07 2.57e-07 2.01e-07 2.66e-07 7.39e-07 3.13e-07 3.28e-08 5.41e-08 1.21e-07 2.35e-07 6.94e-08 1.84e-07 6.89e-08 6.49e-08 5.25e-08 3.46e-08 5.29e-07 4.59e-08 1.92e-08 1.1e-07 1.35e-08 9.38e-08 1.13e-08 4.61e-08