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Genes within 1Mb (chr1:40163116:G:GT):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 279605 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -154697 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -528532 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -181734 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 470934 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -95120 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 586326 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 471631 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 1729 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -368457 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 122883 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 65389 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -345625 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -816572 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -699247 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -286986 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -314174 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -94851 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -528950 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 279605 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -528532 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -181734 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 470934 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -95120 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 586326 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 374251 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 1729 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -368457 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 122883 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 65389 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -345625 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -816572 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -699247 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -314174 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -94851 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -528950 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 279605 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -154697 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -528532 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -181734 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 470934 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -95120 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 586326 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 374251 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 1729 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -368457 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 122883 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 65389 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -345625 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -816572 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -699247 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -314174 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 391768 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -94851 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -528950 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 279605 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -528532 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -181734 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 470934 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -95120 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 586326 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 374251 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 1729 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -368457 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 122883 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 65389 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -345625 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 208004 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -816572 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -699247 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -286986 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -314174 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 391768 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -94851 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -528950 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -528573 eQTL 0.0446 -0.0419 0.0208 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 471631 eQTL 0.0264 -0.0753 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 1729 eQTL 2.21e-14 0.2 0.0258 0.00367 0.00347 0.0486
ENSG00000117013 KCNQ4 -620671 eQTL 8.16e-03 -0.214 0.0807 0.0 0.0 0.0486
ENSG00000131238 PPT1 65389 eQTL 1.39e-27 0.704 0.0627 0.0 0.0 0.0486
ENSG00000164002 EXO5 -345625 eQTL 9.83e-03 -0.127 0.0491 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -94851 eQTL 3.31e-08 -0.249 0.0447 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -95120 1.31e-05 1.27e-05 2.16e-06 8.95e-06 2.46e-06 5.26e-06 1.51e-05 2.08e-06 1.03e-05 5.58e-06 1.57e-05 5.44e-06 2.06e-05 4.89e-06 4.71e-06 6.63e-06 6.5e-06 9.82e-06 2.64e-06 2.86e-06 6.18e-06 1.06e-05 1.23e-05 3.38e-06 1.75e-05 3.73e-06 5.53e-06 4.84e-06 1.45e-05 7.94e-06 6.68e-06 1.06e-06 1.19e-06 3.7e-06 5.01e-06 2.49e-06 1.77e-06 1.99e-06 2.65e-06 1.21e-06 1.01e-06 2.07e-05 2.06e-06 1.63e-07 7.68e-07 2.47e-06 1.74e-06 7.37e-07 4.84e-07
ENSG00000117000 RLF 1729 0.000184 0.000186 2.34e-05 5.67e-05 2.1e-05 6.32e-05 0.000156 2.22e-05 0.000145 6.76e-05 0.000172 7.67e-05 0.000212 6e-05 2.63e-05 0.000109 6.69e-05 9.55e-05 3.08e-05 2.66e-05 5.75e-05 0.000165 0.000146 3.88e-05 0.00018 3.93e-05 7.62e-05 5.53e-05 0.00012 6.45e-05 9.17e-05 6.46e-06 1.02e-05 2.63e-05 2.89e-05 1.83e-05 8.65e-06 1.05e-05 1.7e-05 8.35e-06 3.51e-06 0.000171 1.74e-05 5.74e-07 1.2e-05 1.63e-05 1.65e-05 7e-06 5.08e-06
ENSG00000117016 \N -502566 1.55e-06 1.01e-06 3.67e-07 1.2e-06 1.54e-07 5.4e-07 1.59e-06 1.37e-07 1.2e-06 5.93e-07 1.38e-06 6.36e-07 2.68e-06 2.76e-07 9.73e-07 6.36e-07 7.22e-07 8.27e-07 5.84e-07 6.72e-07 4.43e-07 1.6e-06 8.95e-07 6.2e-07 2.06e-06 2.8e-07 8.22e-07 5.44e-07 1.31e-06 9.25e-07 5.45e-07 6.84e-08 1.95e-07 1.34e-06 5.28e-07 2.96e-07 4.16e-07 1.36e-07 5.09e-07 1.86e-07 2.44e-07 1.63e-06 3.73e-07 1.99e-07 1.81e-07 3.29e-07 2.16e-07 2.28e-08 5.54e-08
ENSG00000131238 PPT1 65389 1.6e-05 1.52e-05 2.52e-06 1.02e-05 2.35e-06 6.32e-06 2.09e-05 2.2e-06 1.37e-05 6.62e-06 1.92e-05 6.72e-06 2.5e-05 6.73e-06 5.23e-06 7.34e-06 8.12e-06 1.23e-05 3.33e-06 3.61e-06 6.87e-06 1.35e-05 1.77e-05 4.43e-06 2.34e-05 4.52e-06 7.44e-06 5.51e-06 1.77e-05 1.03e-05 8.7e-06 1.09e-06 1.38e-06 4.02e-06 5.86e-06 2.76e-06 1.72e-06 2.26e-06 2.96e-06 1.57e-06 9.34e-07 2.92e-05 2.54e-06 1.61e-07 1.02e-06 2.79e-06 1.93e-06 6.27e-07 6.24e-07
ENSG00000187801 \N -286991 4.03e-06 3.13e-06 6.05e-07 2.42e-06 4.53e-07 7.3e-07 2.47e-06 4.13e-07 1.85e-06 1.61e-06 2.88e-06 1.34e-06 7.24e-06 1.2e-06 1.04e-06 1.23e-06 9.55e-07 2.12e-06 1.56e-06 1.19e-06 1.32e-06 3e-06 2.54e-06 1.44e-06 3.61e-06 1.22e-06 1.38e-06 1.8e-06 2.57e-06 1.65e-06 1.67e-06 3.04e-07 5.43e-07 2.78e-06 1.67e-06 9.57e-07 9.55e-07 4.66e-07 9.12e-07 3.99e-07 2.88e-07 4.08e-06 3.65e-07 1.6e-07 3.38e-07 9.44e-07 8.61e-07 2.18e-07 1.97e-07
ENSG00000259943 AL050341.2 -94851 1.33e-05 1.27e-05 2.18e-06 8.95e-06 2.44e-06 5.26e-06 1.51e-05 2.08e-06 1.02e-05 5.58e-06 1.58e-05 5.44e-06 2.06e-05 4.89e-06 4.71e-06 6.63e-06 6.5e-06 9.69e-06 2.66e-06 2.86e-06 6.18e-06 1.06e-05 1.23e-05 3.43e-06 1.75e-05 3.81e-06 5.53e-06 4.84e-06 1.45e-05 7.95e-06 6.68e-06 1.06e-06 1.2e-06 3.7e-06 5.01e-06 2.51e-06 1.77e-06 2e-06 2.65e-06 1.21e-06 1.01e-06 2.08e-05 2.06e-06 1.63e-07 7.68e-07 2.47e-06 1.74e-06 7.37e-07 4.7e-07
ENSG00000261798 \N 374140 2.75e-06 2.1e-06 8.29e-07 1.68e-06 3.83e-07 6.43e-07 1.31e-06 3.22e-07 1.75e-06 8.16e-07 1.95e-06 1.15e-06 3.69e-06 7.13e-07 1.3e-06 9.78e-07 9.15e-07 1.44e-06 7.85e-07 6.46e-07 6.61e-07 1.94e-06 1.38e-06 7.85e-07 2.41e-06 6.95e-07 1e-06 8.31e-07 1.75e-06 1.23e-06 8.18e-07 2.05e-07 3.32e-07 1.69e-06 9.05e-07 5.26e-07 6.94e-07 3.15e-07 1.13e-06 3.78e-07 2.8e-07 2.51e-06 6.52e-07 1.86e-07 2.1e-07 6.75e-07 4.22e-07 7.74e-08 6.58e-08