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Genes within 1Mb (chr1:40163080:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 279569 sc-eQTL 5.22e-01 -0.12 0.187 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -154733 sc-eQTL 4.99e-01 -0.0972 0.143 0.052 CD4_CTL L2
ENSG00000066136 NFYC -528568 sc-eQTL 4.15e-01 0.161 0.197 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -181770 sc-eQTL 3.58e-01 -0.118 0.128 0.052 CD4_CTL L2
ENSG00000084072 PPIE 470898 sc-eQTL 6.23e-01 -0.0965 0.196 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -95156 sc-eQTL 9.69e-01 0.00756 0.196 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 586290 sc-eQTL 2.14e-01 -0.225 0.181 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 471595 sc-eQTL 9.47e-01 -0.0114 0.171 0.052 CD4_CTL L2
ENSG00000117000 RLF 1693 sc-eQTL 8.11e-01 -0.045 0.188 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -368493 sc-eQTL 8.93e-01 0.0239 0.177 0.052 CD4_CTL L2
ENSG00000131236 CAP1 122847 sc-eQTL 8.57e-03 0.331 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 65353 sc-eQTL 1.90e-01 0.258 0.196 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -345661 sc-eQTL 2.76e-01 0.202 0.185 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -816608 sc-eQTL 8.27e-01 -0.0398 0.181 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -699283 sc-eQTL 8.99e-01 0.0198 0.155 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -287022 sc-eQTL 6.00e-01 -0.0881 0.168 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -314210 sc-eQTL 6.67e-01 0.0784 0.182 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -94887 sc-eQTL 6.58e-04 0.595 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -528986 sc-eQTL 2.63e-01 -0.207 0.184 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 279569 sc-eQTL 8.81e-01 -0.0304 0.202 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -528568 sc-eQTL 5.29e-01 -0.134 0.213 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -181770 sc-eQTL 4.79e-01 -0.0984 0.139 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 470898 sc-eQTL 1.96e-02 -0.442 0.188 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -95156 sc-eQTL 6.38e-01 -0.1 0.213 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 586290 sc-eQTL 3.07e-01 -0.185 0.181 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 374215 sc-eQTL 4.07e-01 -0.15 0.181 0.051 NK_CD56bright L2
ENSG00000117000 RLF 1693 sc-eQTL 8.02e-01 0.0451 0.179 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -368493 sc-eQTL 7.90e-01 -0.0538 0.201 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 122847 sc-eQTL 7.13e-05 0.59 0.145 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 65353 sc-eQTL 6.35e-01 0.0952 0.2 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -345661 sc-eQTL 1.11e-01 -0.31 0.193 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -816608 sc-eQTL 3.70e-01 -0.159 0.177 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -699283 sc-eQTL 2.87e-01 -0.198 0.185 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -314210 sc-eQTL 9.35e-01 0.0163 0.198 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -94887 sc-eQTL 1.77e-01 0.274 0.202 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -528986 sc-eQTL 6.14e-01 0.0989 0.196 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 279569 sc-eQTL 6.69e-01 -0.093 0.217 0.07 PB L2
ENSG00000049089 COL9A2 -154733 sc-eQTL 8.86e-01 -0.0276 0.191 0.07 PB L2
ENSG00000066136 NFYC -528568 sc-eQTL 8.21e-02 0.36 0.205 0.07 PB L2
ENSG00000084070 SMAP2 -181770 sc-eQTL 3.41e-01 0.144 0.15 0.07 PB L2
ENSG00000084072 PPIE 470898 sc-eQTL 5.45e-01 -0.118 0.195 0.07 PB L2
ENSG00000084073 ZMPSTE24 -95156 sc-eQTL 2.68e-01 -0.196 0.176 0.07 PB L2
ENSG00000090621 PABPC4 586290 sc-eQTL 3.58e-01 0.109 0.118 0.07 PB L2
ENSG00000116985 BMP8B 374215 sc-eQTL 6.80e-01 -0.0563 0.136 0.07 PB L2
ENSG00000117000 RLF 1693 sc-eQTL 4.28e-01 0.174 0.218 0.07 PB L2
ENSG00000117010 ZNF684 -368493 sc-eQTL 7.77e-01 0.0518 0.182 0.07 PB L2
ENSG00000131236 CAP1 122847 sc-eQTL 4.06e-01 0.153 0.183 0.07 PB L2
ENSG00000131238 PPT1 65353 sc-eQTL 4.98e-01 0.136 0.2 0.07 PB L2
ENSG00000164002 EXO5 -345661 sc-eQTL 2.59e-01 0.227 0.2 0.07 PB L2
ENSG00000171793 CTPS1 -816608 sc-eQTL 2.59e-02 -0.466 0.206 0.07 PB L2
ENSG00000179862 CITED4 -699283 sc-eQTL 8.14e-01 -0.044 0.186 0.07 PB L2
ENSG00000187815 ZFP69 -314210 sc-eQTL 1.39e-01 0.29 0.195 0.07 PB L2
ENSG00000198754 OXCT2 391732 sc-eQTL 2.76e-02 0.385 0.173 0.07 PB L2
ENSG00000259943 AL050341.2 -94887 sc-eQTL 7.53e-01 -0.0654 0.208 0.07 PB L2
ENSG00000272145 NFYC-AS1 -528986 sc-eQTL 6.36e-01 -0.093 0.196 0.07 PB L2
ENSG00000043514 TRIT1 279569 sc-eQTL 8.65e-01 0.0314 0.185 0.05 Pro_T L2
ENSG00000066136 NFYC -528568 sc-eQTL 4.09e-01 0.141 0.171 0.05 Pro_T L2
ENSG00000084070 SMAP2 -181770 sc-eQTL 4.39e-01 0.114 0.147 0.05 Pro_T L2
ENSG00000084072 PPIE 470898 sc-eQTL 9.76e-01 0.00507 0.17 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -95156 sc-eQTL 9.84e-01 -0.00301 0.146 0.05 Pro_T L2
ENSG00000090621 PABPC4 586290 sc-eQTL 6.90e-01 -0.052 0.13 0.05 Pro_T L2
ENSG00000116985 BMP8B 374215 sc-eQTL 5.06e-01 -0.072 0.108 0.05 Pro_T L2
ENSG00000117000 RLF 1693 sc-eQTL 6.15e-01 -0.089 0.177 0.05 Pro_T L2
ENSG00000117010 ZNF684 -368493 sc-eQTL 1.55e-01 0.251 0.176 0.05 Pro_T L2
ENSG00000131236 CAP1 122847 sc-eQTL 6.63e-02 0.26 0.141 0.05 Pro_T L2
ENSG00000131238 PPT1 65353 sc-eQTL 4.28e-01 0.126 0.159 0.05 Pro_T L2
ENSG00000164002 EXO5 -345661 sc-eQTL 5.31e-01 -0.118 0.189 0.05 Pro_T L2
ENSG00000168389 MFSD2A 207968 sc-eQTL 7.27e-01 0.0472 0.135 0.05 Pro_T L2
ENSG00000171793 CTPS1 -816608 sc-eQTL 2.09e-01 0.21 0.167 0.05 Pro_T L2
ENSG00000179862 CITED4 -699283 sc-eQTL 9.37e-01 -0.0125 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -287022 sc-eQTL 2.60e-01 -0.176 0.156 0.05 Pro_T L2
ENSG00000187815 ZFP69 -314210 sc-eQTL 4.31e-01 0.14 0.178 0.05 Pro_T L2
ENSG00000198754 OXCT2 391732 sc-eQTL 9.96e-01 0.000508 0.0917 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -94887 sc-eQTL 6.56e-04 0.606 0.175 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -528986 sc-eQTL 2.61e-01 -0.196 0.174 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -528609 eQTL 0.0446 -0.0419 0.0208 0.0 0.0 0.0486
ENSG00000116983 HPCAL4 471595 eQTL 0.0264 -0.0753 0.0339 0.0 0.0 0.0486
ENSG00000117000 RLF 1693 eQTL 2.21e-14 0.2 0.0258 0.00367 0.00347 0.0486
ENSG00000117013 KCNQ4 -620707 eQTL 8.16e-03 -0.214 0.0807 0.0 0.0 0.0486
ENSG00000131238 PPT1 65353 eQTL 1.39e-27 0.704 0.0627 0.0 0.0 0.0486
ENSG00000164002 EXO5 -345661 eQTL 9.83e-03 -0.127 0.0491 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -94887 eQTL 3.31e-08 -0.249 0.0447 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -95156 7.78e-06 9.52e-06 5.92e-07 3.83e-06 2.08e-06 3.4e-06 9.67e-06 1.44e-06 5.48e-06 3.31e-06 8.96e-06 5.16e-06 1.06e-05 3.78e-06 1.32e-06 5.46e-06 4.1e-06 3.97e-06 2.23e-06 1.63e-06 3.19e-06 7.65e-06 5.66e-06 1.92e-06 1.37e-05 2.26e-06 3.58e-06 2.36e-06 6.27e-06 7.76e-06 4.32e-06 4.74e-07 5.21e-07 1.62e-06 3.58e-06 1.11e-06 1.06e-06 9.68e-07 9.24e-07 5.61e-07 8.36e-07 9.24e-06 1.26e-06 2.07e-07 7.55e-07 8.09e-07 1.04e-06 6.6e-07 3.24e-07
ENSG00000117000 RLF 1693 4.42e-05 3.64e-05 6.95e-06 1.67e-05 6.91e-06 1.74e-05 5.07e-05 5.78e-06 3.78e-05 1.8e-05 4.6e-05 2.14e-05 5.54e-05 1.65e-05 8.33e-06 2.39e-05 2.12e-05 2.99e-05 9e-06 7.8e-06 1.94e-05 3.99e-05 3.62e-05 1.05e-05 5.36e-05 1.02e-05 1.75e-05 1.56e-05 3.61e-05 3.01e-05 2.53e-05 1.96e-06 3.37e-06 7.93e-06 1.33e-05 6.64e-06 3.68e-06 3.44e-06 5.77e-06 3.69e-06 1.77e-06 4.29e-05 4.32e-06 4.38e-07 2.89e-06 4.93e-06 4.68e-06 2.02e-06 1.53e-06
ENSG00000117016 \N -502602 1.27e-06 8.72e-07 1.29e-07 3.04e-07 9.82e-08 3.28e-07 6.09e-07 8.86e-08 4.43e-07 1.65e-07 8.28e-07 4.94e-07 7.02e-07 2.05e-07 2.26e-07 2.55e-07 8.28e-07 4.24e-07 2.25e-07 1.39e-07 2.42e-07 4.99e-07 3.45e-07 1.58e-07 1.59e-06 2.6e-07 2.71e-07 2.83e-07 3.58e-07 8.4e-07 3.56e-07 5.3e-08 5.71e-08 1.4e-07 3.29e-07 1.55e-07 1.31e-07 1.11e-07 5.54e-08 2.59e-08 2.38e-07 7.2e-07 5.33e-08 2.62e-08 1.33e-07 1.31e-08 8.75e-08 2.89e-09 4.8e-08
ENSG00000131238 PPT1 65353 9.28e-06 1.18e-05 1.23e-06 4.79e-06 2.53e-06 4.24e-06 1.06e-05 2.01e-06 8.84e-06 4.73e-06 1.21e-05 6.43e-06 1.3e-05 4.25e-06 2.37e-06 6.33e-06 5.91e-06 7.17e-06 2.61e-06 2.64e-06 4.7e-06 9.57e-06 7.47e-06 2.56e-06 2e-05 3.11e-06 4.74e-06 3.57e-06 8.33e-06 8.01e-06 5.69e-06 7.97e-07 8.21e-07 2.63e-06 4.88e-06 1.85e-06 1.19e-06 1.94e-06 1.12e-06 8.61e-07 1.02e-06 1.27e-05 1.57e-06 2.69e-07 6.84e-07 1.62e-06 1.29e-06 6.58e-07 6.17e-07
ENSG00000187801 \N -287027 2.91e-06 2.58e-06 2.79e-07 1.27e-06 3.76e-07 6.91e-07 1.25e-06 3.9e-07 1.69e-06 5.06e-07 2.02e-06 1.32e-06 2.56e-06 1.1e-06 4.92e-07 1.01e-06 1.49e-06 1.13e-06 6.4e-07 5.01e-07 6.44e-07 1.96e-06 1.1e-06 5.59e-07 3.4e-06 8.11e-07 1.06e-06 9.33e-07 1.62e-06 1.56e-06 7.56e-07 1.57e-07 2.9e-07 6.44e-07 9.39e-07 5.32e-07 6.86e-07 2.97e-07 3.34e-07 3.32e-07 1.67e-07 2.35e-06 5e-07 2.06e-07 3.1e-07 2.33e-07 2.33e-07 8.48e-08 6.26e-08
ENSG00000259943 AL050341.2 -94887 7.78e-06 9.52e-06 5.92e-07 3.85e-06 2.09e-06 3.4e-06 9.72e-06 1.44e-06 5.53e-06 3.31e-06 9.01e-06 5.16e-06 1.06e-05 3.79e-06 1.32e-06 5.46e-06 4.12e-06 3.89e-06 2.25e-06 1.61e-06 3.16e-06 7.71e-06 5.66e-06 1.94e-06 1.37e-05 2.26e-06 3.57e-06 2.3e-06 6.26e-06 7.76e-06 4.32e-06 5.23e-07 5.02e-07 1.62e-06 3.58e-06 1.11e-06 1.06e-06 9.68e-07 9.23e-07 5.61e-07 8.36e-07 9.24e-06 1.26e-06 2.01e-07 7.55e-07 8.09e-07 1.04e-06 6.6e-07 3.24e-07
ENSG00000261798 \N 374104 1.36e-06 1.13e-06 3.05e-07 1.1e-06 1.96e-07 5.26e-07 1.34e-06 2.73e-07 1.15e-06 3.05e-07 1.36e-06 6.55e-07 1.57e-06 2.86e-07 4.16e-07 7.17e-07 1.04e-06 5.82e-07 5.26e-07 4.71e-07 5.47e-07 1.28e-06 7.39e-07 4.62e-07 2.42e-06 3.59e-07 6.16e-07 7.19e-07 8.81e-07 1.29e-06 5.77e-07 5.25e-08 1.94e-07 3.82e-07 5.49e-07 4.6e-07 4.49e-07 1.25e-07 7.63e-08 6.46e-08 2.58e-07 1.49e-06 3.32e-07 1.38e-07 1.59e-07 7.84e-08 1.77e-07 3.84e-08 4.52e-08