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Genes within 1Mb (chr1:40151697:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 268186 sc-eQTL 5.38e-01 -0.117 0.19 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -166116 sc-eQTL 6.73e-01 -0.0615 0.146 0.05 CD4_CTL L2
ENSG00000066136 NFYC -539951 sc-eQTL 6.83e-01 0.0821 0.201 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -193153 sc-eQTL 3.79e-01 -0.114 0.13 0.05 CD4_CTL L2
ENSG00000084072 PPIE 459515 sc-eQTL 6.79e-01 -0.0823 0.199 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -106539 sc-eQTL 8.09e-01 -0.0482 0.199 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 574907 sc-eQTL 3.13e-01 -0.186 0.184 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 460212 sc-eQTL 5.76e-01 -0.0969 0.173 0.05 CD4_CTL L2
ENSG00000117000 RLF -9690 sc-eQTL 7.57e-01 -0.059 0.191 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -379876 sc-eQTL 8.18e-01 0.0414 0.18 0.05 CD4_CTL L2
ENSG00000131236 CAP1 111464 sc-eQTL 6.39e-03 0.349 0.126 0.05 CD4_CTL L2
ENSG00000131238 PPT1 53970 sc-eQTL 3.38e-01 0.192 0.2 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -357044 sc-eQTL 5.48e-01 0.113 0.188 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -827991 sc-eQTL 7.24e-01 -0.0651 0.184 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -710666 sc-eQTL 8.46e-01 0.0306 0.158 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -298405 sc-eQTL 6.54e-01 -0.0765 0.17 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -325593 sc-eQTL 5.34e-01 0.115 0.185 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -106270 sc-eQTL 3.02e-04 0.64 0.174 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -540369 sc-eQTL 2.97e-01 -0.196 0.187 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 268186 sc-eQTL 5.75e-01 -0.124 0.22 0.067 PB L2
ENSG00000049089 COL9A2 -166116 sc-eQTL 8.67e-01 0.0325 0.194 0.067 PB L2
ENSG00000066136 NFYC -539951 sc-eQTL 8.71e-02 0.359 0.208 0.067 PB L2
ENSG00000084070 SMAP2 -193153 sc-eQTL 3.32e-01 0.148 0.152 0.067 PB L2
ENSG00000084072 PPIE 459515 sc-eQTL 5.56e-01 -0.117 0.197 0.067 PB L2
ENSG00000084073 ZMPSTE24 -106539 sc-eQTL 4.21e-01 -0.145 0.179 0.067 PB L2
ENSG00000090621 PABPC4 574907 sc-eQTL 3.01e-01 0.124 0.119 0.067 PB L2
ENSG00000116985 BMP8B 362832 sc-eQTL 6.77e-01 -0.0577 0.138 0.067 PB L2
ENSG00000117000 RLF -9690 sc-eQTL 4.29e-01 0.176 0.222 0.067 PB L2
ENSG00000117010 ZNF684 -379876 sc-eQTL 7.35e-01 0.0627 0.185 0.067 PB L2
ENSG00000131236 CAP1 111464 sc-eQTL 3.69e-01 0.167 0.185 0.067 PB L2
ENSG00000131238 PPT1 53970 sc-eQTL 5.36e-01 0.126 0.203 0.067 PB L2
ENSG00000164002 EXO5 -357044 sc-eQTL 3.47e-01 0.192 0.203 0.067 PB L2
ENSG00000171793 CTPS1 -827991 sc-eQTL 2.50e-02 -0.475 0.209 0.067 PB L2
ENSG00000179862 CITED4 -710666 sc-eQTL 8.04e-01 -0.047 0.189 0.067 PB L2
ENSG00000187815 ZFP69 -325593 sc-eQTL 1.34e-01 0.299 0.198 0.067 PB L2
ENSG00000198754 OXCT2 380349 sc-eQTL 4.18e-02 0.362 0.176 0.067 PB L2
ENSG00000259943 AL050341.2 -106270 sc-eQTL 6.50e-01 -0.0957 0.211 0.067 PB L2
ENSG00000272145 NFYC-AS1 -540369 sc-eQTL 5.54e-01 -0.118 0.198 0.067 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -539992 eQTL 0.0453 -0.0419 0.0209 0.0 0.0 0.0481
ENSG00000116983 HPCAL4 460212 eQTL 0.0332 -0.0726 0.034 0.0 0.0 0.0481
ENSG00000117000 RLF -9690 eQTL 3.23e-14 0.2 0.0259 0.00249 0.00242 0.0481
ENSG00000117013 KCNQ4 -632090 eQTL 5.19e-03 -0.227 0.081 0.0 0.0 0.0481
ENSG00000131238 PPT1 53970 eQTL 1.86e-27 0.706 0.063 0.0 0.0 0.0481
ENSG00000164002 EXO5 -357044 eQTL 1.58e-02 -0.119 0.0493 0.0 0.0 0.0481
ENSG00000168389 MFSD2A 196585 eQTL 0.0323 -0.0861 0.0401 0.0 0.0 0.0481
ENSG00000259943 AL050341.2 -106270 eQTL 5.99e-08 -0.245 0.0449 0.0 0.0 0.0481

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -106539 5.01e-06 7.64e-06 6.27e-07 3.82e-06 1.12e-06 1.53e-06 7.6e-06 9.79e-07 4.95e-06 2.41e-06 5.69e-06 3.37e-06 1.03e-05 1.75e-06 9.99e-07 3.74e-06 1.87e-06 3.98e-06 1.45e-06 1.18e-06 2.77e-06 5.09e-06 4.72e-06 1.35e-06 7.94e-06 1.21e-06 2.35e-06 1.77e-06 5.03e-06 4.4e-06 2.83e-06 5.25e-07 7.33e-07 1.87e-06 2.07e-06 1.17e-06 8.96e-07 4.52e-07 8.13e-07 5.17e-07 1.96e-07 7.23e-06 4.19e-07 1.96e-07 3.41e-07 6.75e-07 6.48e-07 4.26e-07 4.68e-07
ENSG00000117000 RLF -9690 4.79e-05 3.42e-05 5.92e-06 1.41e-05 3.83e-06 1.38e-05 4.36e-05 3.69e-06 2.34e-05 9.72e-06 3.16e-05 1.19e-05 4.26e-05 1.16e-05 6.04e-06 1.39e-05 1.53e-05 2.23e-05 7.02e-06 5.18e-06 1.11e-05 2.47e-05 3.24e-05 6.49e-06 3.83e-05 6.14e-06 9.99e-06 8.22e-06 3.53e-05 2.25e-05 1.73e-05 1.38e-06 1.67e-06 5.34e-06 9.6e-06 4.55e-06 1.76e-06 2.76e-06 3.64e-06 2.18e-06 1.16e-06 3.89e-05 3.5e-06 2.1e-07 1.92e-06 3.23e-06 3.35e-06 1.28e-06 1.3e-06
ENSG00000117016 \N -513985 4.21e-07 2.17e-07 6.28e-08 2.54e-07 9.24e-08 9.05e-08 1.99e-07 5.43e-08 1.5e-07 5.67e-08 1.73e-07 1.15e-07 2.45e-07 8.07e-08 1.01e-07 7.98e-08 4.18e-08 1.64e-07 7.27e-08 4.89e-08 1.22e-07 1.9e-07 1.62e-07 3.49e-08 1.98e-07 1.14e-07 1.17e-07 9.74e-08 1.26e-07 1.05e-07 1.06e-07 3.65e-08 3.96e-08 9.78e-08 5.65e-08 4.68e-08 4.62e-08 9.23e-08 6.42e-08 3.6e-08 3.92e-08 1.46e-07 3.08e-08 1.74e-08 3.83e-08 1.55e-08 1.22e-07 1.96e-09 5.04e-08
ENSG00000131238 PPT1 53970 1e-05 1.25e-05 1.88e-06 7.82e-06 2.19e-06 5.29e-06 1.51e-05 2.13e-06 9.95e-06 5.11e-06 1.33e-05 5.85e-06 2.01e-05 3.8e-06 3.17e-06 6.6e-06 4.98e-06 8.19e-06 2.6e-06 2.79e-06 5.18e-06 1.01e-05 1.04e-05 3.32e-06 1.58e-05 2.84e-06 5.21e-06 4.08e-06 1.37e-05 8.95e-06 6.4e-06 9.52e-07 1.02e-06 3.01e-06 5.01e-06 2.67e-06 1.35e-06 1.68e-06 2.13e-06 1.03e-06 8.05e-07 1.51e-05 1.46e-06 1.59e-07 6.83e-07 1.77e-06 1.3e-06 6.88e-07 5.02e-07
ENSG00000259943 AL050341.2 -106270 5.11e-06 7.64e-06 6.07e-07 3.85e-06 1.12e-06 1.55e-06 7.69e-06 9.99e-07 4.95e-06 2.35e-06 5.67e-06 3.34e-06 1.03e-05 1.73e-06 9.98e-07 3.74e-06 1.89e-06 4e-06 1.47e-06 1.21e-06 2.91e-06 5.15e-06 4.78e-06 1.35e-06 7.95e-06 1.13e-06 2.35e-06 1.77e-06 5.03e-06 4.43e-06 2.83e-06 5.25e-07 7.33e-07 1.87e-06 2.07e-06 1.22e-06 8.96e-07 4.52e-07 8.12e-07 5.17e-07 2.11e-07 7.31e-06 4.19e-07 1.95e-07 3.41e-07 6.75e-07 6.65e-07 4.26e-07 4.68e-07
ENSG00000261798 \N 362721 1.21e-06 8.5e-07 1.31e-07 3.1e-07 1.09e-07 1.64e-07 5.54e-07 9.07e-08 3.82e-07 1.6e-07 4.64e-07 3.36e-07 9.79e-07 1.6e-07 4.26e-07 2.18e-07 3.52e-07 3.74e-07 2.88e-07 8.86e-08 1.57e-07 5.37e-07 3.3e-07 1.73e-07 7.71e-07 1.76e-07 2.56e-07 1.85e-07 3.43e-07 6.19e-07 2.11e-07 5.08e-08 4.98e-08 1.36e-07 3.34e-07 2.54e-07 1.09e-07 7.25e-08 3.82e-08 6.07e-08 5.81e-08 4.02e-07 5.91e-08 1.22e-08 7.26e-08 1.95e-08 7e-08 1.18e-08 5.58e-08