Genes within 1Mb (chr1:40150488:A:G):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 266977 sc-eQTL 5.38e-01 -0.117 0.19 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -167325 sc-eQTL 6.73e-01 -0.0615 0.146 0.05 CD4_CTL L2
ENSG00000066136 NFYC -541160 sc-eQTL 6.83e-01 0.0821 0.201 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -194362 sc-eQTL 3.79e-01 -0.114 0.13 0.05 CD4_CTL L2
ENSG00000084072 PPIE 458306 sc-eQTL 6.79e-01 -0.0823 0.199 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -107748 sc-eQTL 8.09e-01 -0.0482 0.199 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 573698 sc-eQTL 3.13e-01 -0.186 0.184 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 459003 sc-eQTL 5.76e-01 -0.0969 0.173 0.05 CD4_CTL L2
ENSG00000117000 RLF -10899 sc-eQTL 7.57e-01 -0.059 0.191 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -381085 sc-eQTL 8.18e-01 0.0414 0.18 0.05 CD4_CTL L2
ENSG00000131236 CAP1 110255 sc-eQTL 6.39e-03 0.349 0.126 0.05 CD4_CTL L2
ENSG00000131238 PPT1 52761 sc-eQTL 3.38e-01 0.192 0.2 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -358253 sc-eQTL 5.48e-01 0.113 0.188 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -829200 sc-eQTL 7.24e-01 -0.0651 0.184 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -711875 sc-eQTL 8.46e-01 0.0306 0.158 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -299614 sc-eQTL 6.54e-01 -0.0765 0.17 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -326802 sc-eQTL 5.34e-01 0.115 0.185 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -107479 sc-eQTL 3.02e-04 0.64 0.174 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -541578 sc-eQTL 2.97e-01 -0.196 0.187 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 266977 sc-eQTL 5.75e-01 -0.124 0.22 0.067 PB L2
ENSG00000049089 COL9A2 -167325 sc-eQTL 8.67e-01 0.0325 0.194 0.067 PB L2
ENSG00000066136 NFYC -541160 sc-eQTL 8.71e-02 0.359 0.208 0.067 PB L2
ENSG00000084070 SMAP2 -194362 sc-eQTL 3.32e-01 0.148 0.152 0.067 PB L2
ENSG00000084072 PPIE 458306 sc-eQTL 5.56e-01 -0.117 0.197 0.067 PB L2
ENSG00000084073 ZMPSTE24 -107748 sc-eQTL 4.21e-01 -0.145 0.179 0.067 PB L2
ENSG00000090621 PABPC4 573698 sc-eQTL 3.01e-01 0.124 0.119 0.067 PB L2
ENSG00000116985 BMP8B 361623 sc-eQTL 6.77e-01 -0.0577 0.138 0.067 PB L2
ENSG00000117000 RLF -10899 sc-eQTL 4.29e-01 0.176 0.222 0.067 PB L2
ENSG00000117010 ZNF684 -381085 sc-eQTL 7.35e-01 0.0627 0.185 0.067 PB L2
ENSG00000131236 CAP1 110255 sc-eQTL 3.69e-01 0.167 0.185 0.067 PB L2
ENSG00000131238 PPT1 52761 sc-eQTL 5.36e-01 0.126 0.203 0.067 PB L2
ENSG00000164002 EXO5 -358253 sc-eQTL 3.47e-01 0.192 0.203 0.067 PB L2
ENSG00000171793 CTPS1 -829200 sc-eQTL 2.50e-02 -0.475 0.209 0.067 PB L2
ENSG00000179862 CITED4 -711875 sc-eQTL 8.04e-01 -0.047 0.189 0.067 PB L2
ENSG00000187815 ZFP69 -326802 sc-eQTL 1.34e-01 0.299 0.198 0.067 PB L2
ENSG00000198754 OXCT2 379140 sc-eQTL 4.18e-02 0.362 0.176 0.067 PB L2
ENSG00000259943 AL050341.2 -107479 sc-eQTL 6.50e-01 -0.0957 0.211 0.067 PB L2
ENSG00000272145 NFYC-AS1 -541578 sc-eQTL 5.54e-01 -0.118 0.198 0.067 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -107748 5.59e-06 5.83e-06 1.32e-06 3.49e-06 2.22e-06 2.03e-06 8.05e-06 1.8e-06 5.24e-06 4.05e-06 8.09e-06 3.67e-06 9.9e-06 2.19e-06 1.4e-06 5.33e-06 3.12e-06 3.8e-06 2.24e-06 2.44e-06 3.51e-06 7.46e-06 5.05e-06 2.3e-06 9.02e-06 2.91e-06 4.22e-06 2.2e-06 6.6e-06 5.51e-06 3.38e-06 7.97e-07 8.4e-07 2.79e-06 2.47e-06 2.09e-06 1.63e-06 1.29e-06 1.36e-06 8.62e-07 1.01e-06 7.76e-06 9.1e-07 1.61e-07 6.8e-07 1.22e-06 1.12e-06 8.03e-07 4.39e-07
ENSG00000117000 \N -10899 2.81e-05 2.95e-05 6.79e-06 1.6e-05 7.07e-06 1.64e-05 4.36e-05 5.44e-06 3.08e-05 1.61e-05 3.76e-05 1.79e-05 5.08e-05 1.4e-05 7.47e-06 2.04e-05 1.8e-05 2.59e-05 1.02e-05 8e-06 1.82e-05 3.3e-05 3.06e-05 1.12e-05 4.66e-05 9.71e-06 1.62e-05 1.34e-05 3.47e-05 3.19e-05 1.98e-05 2.23e-06 4.04e-06 8.73e-06 1.3e-05 7.55e-06 4.33e-06 3.83e-06 6.44e-06 4e-06 1.96e-06 3.51e-05 3.8e-06 5.62e-07 3.14e-06 5.11e-06 4.65e-06 2.45e-06 1.65e-06
ENSG00000117016 \N -515194 8.48e-07 5.67e-07 1.76e-07 3.62e-07 1.05e-07 2.64e-07 5.65e-07 2.21e-07 6.03e-07 2.98e-07 7.32e-07 4.75e-07 7.71e-07 1.48e-07 3e-07 3.36e-07 4.73e-07 4.11e-07 2.88e-07 1.78e-07 2.5e-07 4.99e-07 3.87e-07 2.19e-07 7.71e-07 2.44e-07 4.34e-07 2.59e-07 4.22e-07 5.56e-07 2.93e-07 4.06e-08 5.86e-08 1.71e-07 3.3e-07 1.94e-07 1.42e-07 1.02e-07 7.45e-08 2.68e-08 1.03e-07 4.42e-07 6.11e-08 1.71e-08 1.47e-07 1.52e-08 1.54e-07 5.93e-08 5.55e-08
ENSG00000131238 \N 52761 1.04e-05 1.18e-05 2.54e-06 7.13e-06 2.57e-06 5.69e-06 1.27e-05 2.96e-06 1.17e-05 6.11e-06 1.45e-05 6.65e-06 1.88e-05 4.08e-06 3.95e-06 8.32e-06 6.45e-06 1e-05 3.59e-06 3.59e-06 6.76e-06 1.18e-05 1.05e-05 4.52e-06 1.95e-05 5.01e-06 7.53e-06 5.26e-06 1.37e-05 1.03e-05 7.59e-06 1.01e-06 1.45e-06 4.2e-06 5.84e-06 3.41e-06 1.87e-06 2.38e-06 2.68e-06 1.73e-06 1.63e-06 1.37e-05 1.97e-06 3.62e-07 1.87e-06 2.35e-06 2.48e-06 1.3e-06 1.04e-06
ENSG00000259943 \N -107479 5.53e-06 5.93e-06 1.32e-06 3.5e-06 2.18e-06 2.1e-06 8.05e-06 1.8e-06 5.22e-06 4.06e-06 8.09e-06 3.67e-06 9.9e-06 2.19e-06 1.46e-06 5.33e-06 3.12e-06 3.77e-06 2.24e-06 2.41e-06 3.52e-06 7.46e-06 5.05e-06 2.36e-06 9.02e-06 2.89e-06 4.22e-06 2.2e-06 6.69e-06 5.55e-06 3.4e-06 8.1e-07 8.4e-07 2.79e-06 2.5e-06 2.09e-06 1.64e-06 1.32e-06 1.36e-06 8.62e-07 9.94e-07 7.76e-06 9.75e-07 1.61e-07 7.05e-07 1.2e-06 1.12e-06 8.03e-07 4.52e-07
ENSG00000261798 \N 361512 1.32e-06 9.44e-07 2.28e-07 5.17e-07 3.46e-07 4.7e-07 1.22e-06 4.1e-07 1.41e-06 4.7e-07 1.39e-06 6.58e-07 1.75e-06 2.8e-07 5.56e-07 8.79e-07 8.37e-07 5.99e-07 8.48e-07 6.4e-07 6.61e-07 1.42e-06 9.21e-07 6.31e-07 1.94e-06 6.16e-07 9.34e-07 7.2e-07 1.25e-06 1.11e-06 5.79e-07 2.56e-07 2.3e-07 7.11e-07 4.36e-07 4.36e-07 6.1e-07 2.15e-07 3.6e-07 2.42e-07 2.89e-07 1.4e-06 1.24e-07 1.95e-08 1.69e-07 1.23e-07 2.33e-07 8.15e-08 1.98e-07