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Genes within 1Mb (chr1:40127455:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 243944 sc-eQTL 5.81e-01 -0.104 0.188 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -190358 sc-eQTL 6.07e-01 -0.0744 0.144 0.052 CD4_CTL L2
ENSG00000066136 NFYC -564193 sc-eQTL 6.31e-01 0.0956 0.199 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -217395 sc-eQTL 3.77e-01 -0.114 0.129 0.052 CD4_CTL L2
ENSG00000084072 PPIE 435273 sc-eQTL 6.63e-01 -0.0861 0.197 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -130781 sc-eQTL 8.00e-01 -0.0499 0.197 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 550665 sc-eQTL 3.42e-01 -0.174 0.182 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 435970 sc-eQTL 6.33e-01 -0.0821 0.172 0.052 CD4_CTL L2
ENSG00000117000 RLF -33932 sc-eQTL 8.47e-01 -0.0364 0.189 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -404118 sc-eQTL 8.46e-01 0.0347 0.179 0.052 CD4_CTL L2
ENSG00000131236 CAP1 87222 sc-eQTL 4.89e-03 0.356 0.125 0.052 CD4_CTL L2
ENSG00000131238 PPT1 29728 sc-eQTL 2.98e-01 0.207 0.198 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -381286 sc-eQTL 4.66e-01 0.136 0.186 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -852233 sc-eQTL 7.57e-01 -0.0564 0.182 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -734908 sc-eQTL 9.00e-01 0.0198 0.156 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -322647 sc-eQTL 7.53e-01 -0.0532 0.169 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -349835 sc-eQTL 5.64e-01 0.106 0.183 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -130512 sc-eQTL 2.67e-04 0.64 0.172 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -564611 sc-eQTL 2.60e-01 -0.21 0.186 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 243944 sc-eQTL 9.90e-01 -0.00269 0.206 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -564193 sc-eQTL 4.33e-01 -0.17 0.217 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -217395 sc-eQTL 7.40e-01 -0.0473 0.142 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 435273 sc-eQTL 1.83e-02 -0.456 0.192 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -130781 sc-eQTL 6.68e-01 -0.0935 0.217 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 550665 sc-eQTL 2.37e-01 -0.219 0.185 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 338590 sc-eQTL 6.30e-01 -0.0892 0.185 0.051 NK_CD56bright L2
ENSG00000117000 RLF -33932 sc-eQTL 9.61e-01 0.00895 0.183 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -404118 sc-eQTL 9.15e-01 -0.0219 0.206 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 87222 sc-eQTL 3.25e-05 0.63 0.148 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 29728 sc-eQTL 7.10e-01 0.0761 0.204 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -381286 sc-eQTL 1.17e-01 -0.312 0.198 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -852233 sc-eQTL 3.01e-01 -0.188 0.181 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -734908 sc-eQTL 2.13e-01 -0.236 0.189 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -349835 sc-eQTL 9.72e-01 -0.00717 0.202 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -130512 sc-eQTL 1.25e-01 0.318 0.206 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -564611 sc-eQTL 8.42e-01 0.0399 0.2 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 243944 sc-eQTL 4.84e-01 -0.143 0.204 0.07 PB L2
ENSG00000049089 COL9A2 -190358 sc-eQTL 7.39e-01 0.0601 0.18 0.07 PB L2
ENSG00000066136 NFYC -564193 sc-eQTL 1.02e-01 0.318 0.193 0.07 PB L2
ENSG00000084070 SMAP2 -217395 sc-eQTL 4.00e-01 0.119 0.141 0.07 PB L2
ENSG00000084072 PPIE 435273 sc-eQTL 5.84e-01 -0.101 0.183 0.07 PB L2
ENSG00000084073 ZMPSTE24 -130781 sc-eQTL 4.19e-01 -0.135 0.166 0.07 PB L2
ENSG00000090621 PABPC4 550665 sc-eQTL 3.92e-01 0.0952 0.111 0.07 PB L2
ENSG00000116985 BMP8B 338590 sc-eQTL 8.80e-01 -0.0193 0.128 0.07 PB L2
ENSG00000117000 RLF -33932 sc-eQTL 4.48e-01 0.157 0.205 0.07 PB L2
ENSG00000117010 ZNF684 -404118 sc-eQTL 8.05e-01 0.0424 0.171 0.07 PB L2
ENSG00000131236 CAP1 87222 sc-eQTL 3.63e-01 0.157 0.172 0.07 PB L2
ENSG00000131238 PPT1 29728 sc-eQTL 4.17e-01 0.153 0.188 0.07 PB L2
ENSG00000164002 EXO5 -381286 sc-eQTL 4.37e-01 0.147 0.188 0.07 PB L2
ENSG00000171793 CTPS1 -852233 sc-eQTL 4.08e-02 -0.403 0.195 0.07 PB L2
ENSG00000179862 CITED4 -734908 sc-eQTL 8.64e-01 -0.03 0.175 0.07 PB L2
ENSG00000187815 ZFP69 -349835 sc-eQTL 1.33e-01 0.277 0.183 0.07 PB L2
ENSG00000198754 OXCT2 356107 sc-eQTL 3.25e-02 0.352 0.162 0.07 PB L2
ENSG00000259943 AL050341.2 -130512 sc-eQTL 5.54e-01 -0.116 0.195 0.07 PB L2
ENSG00000272145 NFYC-AS1 -564611 sc-eQTL 5.97e-01 -0.0975 0.184 0.07 PB L2
ENSG00000043514 TRIT1 243944 sc-eQTL 7.77e-01 -0.0508 0.179 0.05 Pro_T L2
ENSG00000066136 NFYC -564193 sc-eQTL 7.11e-01 0.0614 0.166 0.05 Pro_T L2
ENSG00000084070 SMAP2 -217395 sc-eQTL 3.77e-01 0.126 0.142 0.05 Pro_T L2
ENSG00000084072 PPIE 435273 sc-eQTL 8.95e-01 -0.0217 0.165 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -130781 sc-eQTL 8.34e-01 0.0296 0.141 0.05 Pro_T L2
ENSG00000090621 PABPC4 550665 sc-eQTL 6.91e-01 -0.05 0.126 0.05 Pro_T L2
ENSG00000116985 BMP8B 338590 sc-eQTL 4.75e-01 -0.0747 0.104 0.05 Pro_T L2
ENSG00000117000 RLF -33932 sc-eQTL 7.32e-01 -0.0587 0.171 0.05 Pro_T L2
ENSG00000117010 ZNF684 -404118 sc-eQTL 1.45e-01 0.248 0.17 0.05 Pro_T L2
ENSG00000131236 CAP1 87222 sc-eQTL 4.74e-02 0.271 0.136 0.05 Pro_T L2
ENSG00000131238 PPT1 29728 sc-eQTL 3.96e-01 0.131 0.154 0.05 Pro_T L2
ENSG00000164002 EXO5 -381286 sc-eQTL 6.10e-01 -0.0931 0.182 0.05 Pro_T L2
ENSG00000168389 MFSD2A 172343 sc-eQTL 5.68e-01 0.0746 0.131 0.05 Pro_T L2
ENSG00000171793 CTPS1 -852233 sc-eQTL 4.36e-01 0.126 0.162 0.05 Pro_T L2
ENSG00000179862 CITED4 -734908 sc-eQTL 8.84e-01 -0.0222 0.152 0.05 Pro_T L2
ENSG00000187801 ZFP69B -322647 sc-eQTL 2.24e-01 -0.184 0.15 0.05 Pro_T L2
ENSG00000187815 ZFP69 -349835 sc-eQTL 3.11e-01 0.174 0.172 0.05 Pro_T L2
ENSG00000198754 OXCT2 356107 sc-eQTL 8.46e-01 0.0172 0.0886 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -130512 sc-eQTL 6.86e-04 0.584 0.169 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -564611 sc-eQTL 3.50e-01 -0.158 0.168 0.05 Pro_T L2
ENSG00000043514 TRIT1 243944 sc-eQTL 1.03e-01 0.339 0.206 0.052 gdT L2
ENSG00000066136 NFYC -564193 sc-eQTL 9.44e-01 -0.017 0.242 0.052 gdT L2
ENSG00000084070 SMAP2 -217395 sc-eQTL 5.15e-01 -0.102 0.157 0.052 gdT L2
ENSG00000084072 PPIE 435273 sc-eQTL 8.53e-01 0.0419 0.225 0.052 gdT L2
ENSG00000084073 ZMPSTE24 -130781 sc-eQTL 1.02e-01 0.373 0.226 0.052 gdT L2
ENSG00000090621 PABPC4 550665 sc-eQTL 1.93e-01 0.258 0.197 0.052 gdT L2
ENSG00000116985 BMP8B 338590 sc-eQTL 6.61e-01 -0.0831 0.189 0.052 gdT L2
ENSG00000117000 RLF -33932 sc-eQTL 3.94e-01 0.16 0.188 0.052 gdT L2
ENSG00000117010 ZNF684 -404118 sc-eQTL 9.76e-01 -0.00657 0.217 0.052 gdT L2
ENSG00000131236 CAP1 87222 sc-eQTL 6.67e-02 0.284 0.154 0.052 gdT L2
ENSG00000131238 PPT1 29728 sc-eQTL 5.98e-01 0.117 0.22 0.052 gdT L2
ENSG00000164002 EXO5 -381286 sc-eQTL 3.92e-01 -0.189 0.22 0.052 gdT L2
ENSG00000168389 MFSD2A 172343 sc-eQTL 1.98e-01 -0.241 0.186 0.052 gdT L2
ENSG00000171793 CTPS1 -852233 sc-eQTL 1.25e-01 -0.315 0.204 0.052 gdT L2
ENSG00000179862 CITED4 -734908 sc-eQTL 3.14e-01 -0.212 0.21 0.052 gdT L2
ENSG00000187801 ZFP69B -322647 sc-eQTL 5.13e-01 0.135 0.205 0.052 gdT L2
ENSG00000187815 ZFP69 -349835 sc-eQTL 9.19e-01 -0.0226 0.221 0.052 gdT L2
ENSG00000198754 OXCT2 356107 sc-eQTL 7.28e-01 0.0542 0.155 0.052 gdT L2
ENSG00000259943 AL050341.2 -130512 sc-eQTL 8.62e-01 0.0368 0.212 0.052 gdT L2
ENSG00000272145 NFYC-AS1 -564611 sc-eQTL 3.28e-01 0.212 0.216 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -130781 3.31e-06 3.13e-06 3.1e-07 2.02e-06 4.74e-07 7.26e-07 2.29e-06 6.32e-07 1.96e-06 9.55e-07 2.52e-06 1.34e-06 3.55e-06 1.39e-06 8.73e-07 1.51e-06 1.55e-06 2.29e-06 1.15e-06 1.4e-06 1.04e-06 2.99e-06 2.46e-06 1.07e-06 4.08e-06 1.26e-06 1.35e-06 1.63e-06 2.28e-06 2.55e-06 1.81e-06 3.22e-07 5.18e-07 1.3e-06 1.56e-06 8.66e-07 8.33e-07 4.03e-07 1.16e-06 3.98e-07 2.88e-07 3.42e-06 5.97e-07 1.9e-07 3.68e-07 3.28e-07 7.71e-07 2.18e-07 2.13e-07
ENSG00000117000 \N -33932 1.04e-05 1.18e-05 1.56e-06 6.16e-06 2.31e-06 4.8e-06 1.21e-05 1.93e-06 1.01e-05 5.49e-06 1.33e-05 5.64e-06 1.76e-05 3.99e-06 3.14e-06 6.54e-06 5.51e-06 7.72e-06 2.93e-06 2.81e-06 5.86e-06 1.03e-05 9.11e-06 3.27e-06 1.66e-05 4.31e-06 5.21e-06 4.51e-06 1.22e-05 1.08e-05 6.33e-06 1.01e-06 1.13e-06 3.37e-06 4.71e-06 2.65e-06 1.76e-06 1.94e-06 2.23e-06 9.8e-07 9.55e-07 1.39e-05 1.61e-06 1.5e-07 7.7e-07 1.8e-06 1.78e-06 7.76e-07 4.4e-07
ENSG00000117016 \N -538227 3.21e-07 1.59e-07 5.91e-08 2.28e-07 9.94e-08 8.4e-08 2.24e-07 5.82e-08 1.54e-07 9.35e-08 1.66e-07 1.23e-07 2.13e-07 8.15e-08 5.62e-08 7.98e-08 4.63e-08 1.77e-07 7.29e-08 7.83e-08 1.18e-07 1.47e-07 1.68e-07 3.68e-08 2.28e-07 1.31e-07 1.22e-07 1.12e-07 1.32e-07 1.38e-07 1.14e-07 5.22e-08 4.23e-08 9.5e-08 5.5e-08 3.11e-08 4.84e-08 7.51e-08 6.21e-08 7.78e-08 4.42e-08 1.6e-07 3.55e-08 1.43e-08 3.3e-08 6.53e-09 7e-08 0.0 4.91e-08
ENSG00000131238 \N 29728 1.11e-05 1.25e-05 1.98e-06 6.9e-06 2.42e-06 5.45e-06 1.46e-05 2.11e-06 1.05e-05 5.42e-06 1.45e-05 6.24e-06 1.96e-05 4.48e-06 3.5e-06 6.87e-06 6.42e-06 8.89e-06 3.2e-06 3.15e-06 6.52e-06 1.1e-05 1.04e-05 3.39e-06 1.93e-05 4.45e-06 6.24e-06 4.83e-06 1.34e-05 1.21e-05 7.59e-06 1.08e-06 1.22e-06 3.61e-06 5.01e-06 2.81e-06 1.9e-06 2e-06 2.06e-06 1.1e-06 9.87e-07 1.58e-05 1.61e-06 1.38e-07 7.93e-07 1.67e-06 1.79e-06 6.7e-07 4.65e-07
ENSG00000259943 \N -130512 3.31e-06 3.15e-06 3.1e-07 2.02e-06 4.62e-07 7.11e-07 2.24e-06 6.32e-07 1.96e-06 9.55e-07 2.52e-06 1.4e-06 3.55e-06 1.39e-06 8.59e-07 1.52e-06 1.56e-06 2.3e-06 1.15e-06 1.44e-06 1.07e-06 3.01e-06 2.47e-06 1.08e-06 4.05e-06 1.26e-06 1.39e-06 1.63e-06 2.28e-06 2.55e-06 1.81e-06 3.22e-07 5.19e-07 1.29e-06 1.56e-06 8.86e-07 8.34e-07 4.03e-07 1.16e-06 3.98e-07 2.88e-07 3.42e-06 5.97e-07 1.9e-07 3.82e-07 3.28e-07 7.71e-07 2.18e-07 2.13e-07
ENSG00000261798 \N 338479 1.01e-06 6.46e-07 1.07e-07 4.31e-07 9.86e-08 2.86e-07 6.06e-07 1.48e-07 4.3e-07 2.43e-07 8.08e-07 3.84e-07 8.37e-07 1.59e-07 2.48e-07 2.23e-07 4.54e-07 4.11e-07 2.56e-07 2.37e-07 2.05e-07 3.92e-07 3.87e-07 1.94e-07 9.71e-07 2.54e-07 3.26e-07 2.69e-07 4.06e-07 7.6e-07 3.1e-07 4.06e-08 5.86e-08 1.67e-07 3.7e-07 1.21e-07 1.12e-07 1.08e-07 6.66e-08 8.29e-09 9.77e-08 6.11e-07 4.41e-08 1.11e-08 1.33e-07 1.5e-08 1.3e-07 2.38e-08 4.71e-08