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Genes within 1Mb (chr1:40119279:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 235768 sc-eQTL 5.38e-01 -0.117 0.19 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -198534 sc-eQTL 6.73e-01 -0.0615 0.146 0.05 CD4_CTL L2
ENSG00000066136 NFYC -572369 sc-eQTL 6.83e-01 0.0821 0.201 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -225571 sc-eQTL 3.79e-01 -0.114 0.13 0.05 CD4_CTL L2
ENSG00000084072 PPIE 427097 sc-eQTL 6.79e-01 -0.0823 0.199 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -138957 sc-eQTL 8.09e-01 -0.0482 0.199 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 542489 sc-eQTL 3.13e-01 -0.186 0.184 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 427794 sc-eQTL 5.76e-01 -0.0969 0.173 0.05 CD4_CTL L2
ENSG00000117000 RLF -42108 sc-eQTL 7.57e-01 -0.059 0.191 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -412294 sc-eQTL 8.18e-01 0.0414 0.18 0.05 CD4_CTL L2
ENSG00000131236 CAP1 79046 sc-eQTL 6.39e-03 0.349 0.126 0.05 CD4_CTL L2
ENSG00000131238 PPT1 21552 sc-eQTL 3.38e-01 0.192 0.2 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -389462 sc-eQTL 5.48e-01 0.113 0.188 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -860409 sc-eQTL 7.24e-01 -0.0651 0.184 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -743084 sc-eQTL 8.46e-01 0.0306 0.158 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -330823 sc-eQTL 6.54e-01 -0.0765 0.17 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -358011 sc-eQTL 5.34e-01 0.115 0.185 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -138688 sc-eQTL 3.02e-04 0.64 0.174 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -572787 sc-eQTL 2.97e-01 -0.196 0.187 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 235768 sc-eQTL 5.75e-01 -0.124 0.22 0.067 PB L2
ENSG00000049089 COL9A2 -198534 sc-eQTL 8.67e-01 0.0325 0.194 0.067 PB L2
ENSG00000066136 NFYC -572369 sc-eQTL 8.71e-02 0.359 0.208 0.067 PB L2
ENSG00000084070 SMAP2 -225571 sc-eQTL 3.32e-01 0.148 0.152 0.067 PB L2
ENSG00000084072 PPIE 427097 sc-eQTL 5.56e-01 -0.117 0.197 0.067 PB L2
ENSG00000084073 ZMPSTE24 -138957 sc-eQTL 4.21e-01 -0.145 0.179 0.067 PB L2
ENSG00000090621 PABPC4 542489 sc-eQTL 3.01e-01 0.124 0.119 0.067 PB L2
ENSG00000116985 BMP8B 330414 sc-eQTL 6.77e-01 -0.0577 0.138 0.067 PB L2
ENSG00000117000 RLF -42108 sc-eQTL 4.29e-01 0.176 0.222 0.067 PB L2
ENSG00000117010 ZNF684 -412294 sc-eQTL 7.35e-01 0.0627 0.185 0.067 PB L2
ENSG00000131236 CAP1 79046 sc-eQTL 3.69e-01 0.167 0.185 0.067 PB L2
ENSG00000131238 PPT1 21552 sc-eQTL 5.36e-01 0.126 0.203 0.067 PB L2
ENSG00000164002 EXO5 -389462 sc-eQTL 3.47e-01 0.192 0.203 0.067 PB L2
ENSG00000171793 CTPS1 -860409 sc-eQTL 2.50e-02 -0.475 0.209 0.067 PB L2
ENSG00000179862 CITED4 -743084 sc-eQTL 8.04e-01 -0.047 0.189 0.067 PB L2
ENSG00000187815 ZFP69 -358011 sc-eQTL 1.34e-01 0.299 0.198 0.067 PB L2
ENSG00000198754 OXCT2 347931 sc-eQTL 4.18e-02 0.362 0.176 0.067 PB L2
ENSG00000259943 AL050341.2 -138688 sc-eQTL 6.50e-01 -0.0957 0.211 0.067 PB L2
ENSG00000272145 NFYC-AS1 -572787 sc-eQTL 5.54e-01 -0.118 0.198 0.067 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -572410 eQTL 0.0459 -0.0419 0.0209 0.0 0.0 0.0481
ENSG00000116983 HPCAL4 427794 eQTL 0.0327 -0.0729 0.0341 0.0 0.0 0.0481
ENSG00000117000 RLF -42108 eQTL 3.09e-14 0.2 0.0259 0.00257 0.00252 0.0481
ENSG00000117013 KCNQ4 -664508 eQTL 5.29e-03 -0.227 0.0811 0.0 0.0 0.0481
ENSG00000131238 PPT1 21552 eQTL 1.88e-27 0.707 0.0631 0.0 0.0 0.0481
ENSG00000164002 EXO5 -389462 eQTL 1.61e-02 -0.119 0.0494 0.0 0.0 0.0481
ENSG00000168389 MFSD2A 164167 eQTL 0.0318 -0.0864 0.0402 0.0 0.0 0.0481
ENSG00000259943 AL050341.2 -138688 eQTL 6.23e-08 -0.245 0.045 0.0 0.0 0.0481

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -138957 3.99e-06 5.22e-06 6.64e-07 3.5e-06 1.27e-06 1.39e-06 4.07e-06 9.96e-07 5.16e-06 1.99e-06 4.99e-06 3.52e-06 7.22e-06 2.11e-06 1.47e-06 3.81e-06 2.07e-06 2.94e-06 1.55e-06 1.16e-06 1.92e-06 4.23e-06 3.67e-06 1.71e-06 7.45e-06 1.37e-06 2.47e-06 1.77e-06 4.32e-06 4e-06 2.72e-06 5.87e-07 7.91e-07 1.92e-06 2.22e-06 9e-07 9.91e-07 4.24e-07 9.68e-07 6.24e-07 4.42e-07 5.69e-06 5.26e-07 2.1e-07 3.68e-07 5.17e-07 1.01e-06 5.05e-07 2.69e-07
ENSG00000117000 RLF -42108 1.56e-05 2.43e-05 3.26e-06 1.32e-05 3.08e-06 8.2e-06 2.62e-05 3.4e-06 1.94e-05 9.14e-06 2.42e-05 9.59e-06 3.45e-05 9.13e-06 5.26e-06 1.15e-05 9.13e-06 1.59e-05 5.39e-06 4.29e-06 8.39e-06 1.78e-05 1.93e-05 5.33e-06 3.23e-05 5.34e-06 8.21e-06 8.12e-06 2.05e-05 1.55e-05 1.29e-05 1.41e-06 1.51e-06 4.56e-06 8.46e-06 4.4e-06 1.85e-06 2.73e-06 3.21e-06 2.66e-06 1.12e-06 2.7e-05 2.69e-06 2.86e-07 1.41e-06 2.68e-06 3.11e-06 1.26e-06 1.08e-06
ENSG00000117016 \N -546403 2.74e-07 1.42e-07 6.86e-08 2.27e-07 1.01e-07 9.48e-08 1.73e-07 5.43e-08 1.5e-07 5.42e-08 1.52e-07 9.19e-08 1.59e-07 7.13e-08 5.91e-08 7.89e-08 4.09e-08 1.4e-07 7.29e-08 5.46e-08 1.25e-07 1.26e-07 1.5e-07 2.93e-08 1.63e-07 1.26e-07 1.17e-07 1.01e-07 1.22e-07 1.07e-07 1.02e-07 4.93e-08 3.68e-08 8.89e-08 5.99e-08 2.68e-08 6.24e-08 7.61e-08 6.58e-08 6.55e-08 5.05e-08 1.48e-07 3.65e-08 5.71e-08 3.83e-08 1.77e-08 9.96e-08 2.16e-09 4.85e-08
ENSG00000131238 PPT1 21552 2.93e-05 3.25e-05 5.65e-06 1.55e-05 4.91e-06 1.29e-05 4.07e-05 4.24e-06 2.85e-05 1.4e-05 3.59e-05 1.52e-05 4.7e-05 1.3e-05 6.45e-06 1.72e-05 1.47e-05 2.23e-05 7.47e-06 5.95e-06 1.3e-05 2.83e-05 2.86e-05 8.24e-06 4.15e-05 6.6e-06 1.28e-05 1.17e-05 3.04e-05 2.23e-05 1.83e-05 1.58e-06 2.38e-06 6.6e-06 1.08e-05 5.52e-06 2.77e-06 3.16e-06 4.24e-06 3.22e-06 1.63e-06 3.66e-05 2.88e-06 3.59e-07 2.1e-06 3.67e-06 3.88e-06 1.49e-06 1.56e-06
ENSG00000259943 AL050341.2 -138688 3.97e-06 5.1e-06 6.63e-07 3.51e-06 1.31e-06 1.39e-06 4.13e-06 9.76e-07 5.16e-06 1.99e-06 4.99e-06 3.54e-06 7.2e-06 2.03e-06 1.43e-06 3.83e-06 2.07e-06 2.96e-06 1.55e-06 1.16e-06 1.9e-06 4.23e-06 3.67e-06 1.71e-06 7.58e-06 1.43e-06 2.43e-06 1.77e-06 4.3e-06 4e-06 2.72e-06 5.86e-07 7.91e-07 1.96e-06 2.22e-06 9e-07 1.02e-06 4.24e-07 9.49e-07 6.24e-07 4.41e-07 5.64e-06 5.62e-07 2.1e-07 3.69e-07 5.17e-07 9.94e-07 5.05e-07 2.69e-07
ENSG00000261798 \N 330303 7.57e-07 8.5e-07 2.77e-07 4.03e-07 1.1e-07 2.54e-07 6.19e-07 1.4e-07 6.62e-07 2.39e-07 8.28e-07 4.28e-07 9.1e-07 1.59e-07 2.26e-07 3.96e-07 4.54e-07 4.22e-07 4e-07 4.06e-07 2.35e-07 4.31e-07 4.12e-07 1.78e-07 1.2e-06 2.49e-07 4.68e-07 3.13e-07 4.76e-07 7.71e-07 3.56e-07 1.57e-07 5.95e-08 1.79e-07 3.38e-07 2.15e-07 4.12e-07 1.36e-07 8.35e-08 9.03e-08 1.67e-07 7.54e-07 5.81e-08 1.63e-07 1.15e-07 1.52e-08 1.49e-07 8.49e-08 6.04e-08