Genes within 1Mb (chr1:40108936:CT:C):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 225425 sc-eQTL 5.38e-01 -0.117 0.19 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -208877 sc-eQTL 6.73e-01 -0.0615 0.146 0.05 CD4_CTL L2
ENSG00000066136 NFYC -582712 sc-eQTL 6.83e-01 0.0821 0.201 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -235914 sc-eQTL 3.79e-01 -0.114 0.13 0.05 CD4_CTL L2
ENSG00000084072 PPIE 416754 sc-eQTL 6.79e-01 -0.0823 0.199 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -149300 sc-eQTL 8.09e-01 -0.0482 0.199 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 532146 sc-eQTL 3.13e-01 -0.186 0.184 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 417451 sc-eQTL 5.76e-01 -0.0969 0.173 0.05 CD4_CTL L2
ENSG00000117000 RLF -52451 sc-eQTL 7.57e-01 -0.059 0.191 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -422637 sc-eQTL 8.18e-01 0.0414 0.18 0.05 CD4_CTL L2
ENSG00000131236 CAP1 68703 sc-eQTL 6.39e-03 0.349 0.126 0.05 CD4_CTL L2
ENSG00000131238 PPT1 11209 sc-eQTL 3.38e-01 0.192 0.2 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -399805 sc-eQTL 5.48e-01 0.113 0.188 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -870752 sc-eQTL 7.24e-01 -0.0651 0.184 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -753427 sc-eQTL 8.46e-01 0.0306 0.158 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -341166 sc-eQTL 6.54e-01 -0.0765 0.17 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -368354 sc-eQTL 5.34e-01 0.115 0.185 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -149031 sc-eQTL 3.02e-04 0.64 0.174 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -583130 sc-eQTL 2.97e-01 -0.196 0.187 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 225425 sc-eQTL 5.75e-01 -0.124 0.22 0.067 PB L2
ENSG00000049089 COL9A2 -208877 sc-eQTL 8.67e-01 0.0325 0.194 0.067 PB L2
ENSG00000066136 NFYC -582712 sc-eQTL 8.71e-02 0.359 0.208 0.067 PB L2
ENSG00000084070 SMAP2 -235914 sc-eQTL 3.32e-01 0.148 0.152 0.067 PB L2
ENSG00000084072 PPIE 416754 sc-eQTL 5.56e-01 -0.117 0.197 0.067 PB L2
ENSG00000084073 ZMPSTE24 -149300 sc-eQTL 4.21e-01 -0.145 0.179 0.067 PB L2
ENSG00000090621 PABPC4 532146 sc-eQTL 3.01e-01 0.124 0.119 0.067 PB L2
ENSG00000116985 BMP8B 320071 sc-eQTL 6.77e-01 -0.0577 0.138 0.067 PB L2
ENSG00000117000 RLF -52451 sc-eQTL 4.29e-01 0.176 0.222 0.067 PB L2
ENSG00000117010 ZNF684 -422637 sc-eQTL 7.35e-01 0.0627 0.185 0.067 PB L2
ENSG00000131236 CAP1 68703 sc-eQTL 3.69e-01 0.167 0.185 0.067 PB L2
ENSG00000131238 PPT1 11209 sc-eQTL 5.36e-01 0.126 0.203 0.067 PB L2
ENSG00000164002 EXO5 -399805 sc-eQTL 3.47e-01 0.192 0.203 0.067 PB L2
ENSG00000171793 CTPS1 -870752 sc-eQTL 2.50e-02 -0.475 0.209 0.067 PB L2
ENSG00000179862 CITED4 -753427 sc-eQTL 8.04e-01 -0.047 0.189 0.067 PB L2
ENSG00000187815 ZFP69 -368354 sc-eQTL 1.34e-01 0.299 0.198 0.067 PB L2
ENSG00000198754 OXCT2 337588 sc-eQTL 4.18e-02 0.362 0.176 0.067 PB L2
ENSG00000259943 AL050341.2 -149031 sc-eQTL 6.50e-01 -0.0957 0.211 0.067 PB L2
ENSG00000272145 NFYC-AS1 -583130 sc-eQTL 5.54e-01 -0.118 0.198 0.067 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -149300 7.19e-05 1.38e-05 1.96e-06 4.2e-06 2.46e-06 1.09e-05 1.65e-05 1.01e-06 1.05e-05 4.73e-06 9.93e-06 5.55e-06 1.39e-05 3.63e-06 3.96e-06 6.58e-06 4.09e-06 9.74e-06 2.58e-06 1.4e-06 4.99e-06 1.09e-05 1.14e-05 2.32e-06 1.28e-05 3.09e-06 4.55e-06 2.36e-06 1.44e-05 8.22e-06 4.33e-06 2.51e-07 8.3e-07 1.52e-06 3.62e-06 1.12e-06 9.21e-07 4.76e-07 8.67e-07 5.01e-07 3.67e-07 1.88e-05 2.25e-06 1.69e-07 7.07e-07 2.47e-06 1.74e-06 5.06e-07 5.14e-07
ENSG00000117000 \N -52451 7.74e-05 3.64e-05 5.6e-06 1.17e-05 4e-06 1.87e-05 4.55e-05 2.11e-06 2.19e-05 8.72e-06 2.51e-05 1.08e-05 4.02e-05 8.91e-06 5.98e-06 1.45e-05 1.53e-05 2.25e-05 6.6e-06 3.93e-06 1.11e-05 2.43e-05 3.2e-05 7.43e-06 3.23e-05 6.43e-06 8.23e-06 6.87e-06 3.31e-05 2.47e-05 1.31e-05 1.05e-06 1.92e-06 3.54e-06 9.01e-06 3.78e-06 1.82e-06 2.15e-06 2.23e-06 1.34e-06 1.01e-06 4.24e-05 3.58e-06 1.96e-07 2.16e-06 3.72e-06 3.71e-06 9.83e-07 1.24e-06
ENSG00000131238 \N 11209 0.000158 9.05e-05 1.22e-05 2.42e-05 9.44e-06 3.49e-05 9.6e-05 7.32e-06 6.63e-05 2.46e-05 9.56e-05 3.58e-05 0.000144 2.77e-05 1.27e-05 4.35e-05 4.11e-05 6.33e-05 1.64e-05 1.32e-05 3.11e-05 7.88e-05 8.23e-05 1.93e-05 9.17e-05 1.98e-05 2.7e-05 2.25e-05 9.01e-05 5.78e-05 4.64e-05 2.63e-06 5.62e-06 1e-05 1.84e-05 1.08e-05 4.42e-06 4.99e-06 7.05e-06 3.85e-06 1.92e-06 0.000129 1.21e-05 5.78e-07 5.78e-06 9.8e-06 7.8e-06 2.74e-06 2.78e-06
ENSG00000259943 \N -149031 7.19e-05 1.4e-05 1.96e-06 4.2e-06 2.46e-06 1.09e-05 1.65e-05 9.91e-07 1.05e-05 4.73e-06 1.01e-05 5.55e-06 1.4e-05 3.63e-06 3.96e-06 6.58e-06 4.04e-06 9.74e-06 2.58e-06 1.41e-06 4.99e-06 1.09e-05 1.14e-05 2.32e-06 1.28e-05 3.09e-06 4.47e-06 2.36e-06 1.44e-05 8.22e-06 4.35e-06 2.51e-07 8.3e-07 1.52e-06 3.7e-06 1.13e-06 9.38e-07 4.76e-07 8.84e-07 5e-07 3.67e-07 1.88e-05 2.25e-06 1.69e-07 7.07e-07 2.47e-06 1.74e-06 5.21e-07 4.98e-07
ENSG00000261798 \N 319960 3.44e-05 8.81e-06 1.35e-06 2.63e-06 1.57e-06 6.2e-06 9.34e-06 4.94e-07 4.79e-06 2.41e-06 4.69e-06 3.12e-06 7.67e-06 2.79e-06 1.67e-06 4.07e-06 2.07e-06 4.08e-06 1.29e-06 1.5e-06 3.09e-06 7.69e-06 5.56e-06 1.77e-06 8.25e-06 1.96e-06 2.55e-06 1.44e-06 7.04e-06 5.53e-06 2.53e-06 1.3e-07 8.12e-07 1.28e-06 2.05e-06 9.52e-07 6.46e-07 3.37e-07 1.35e-06 3.74e-07 1.93e-07 1.03e-05 1.38e-06 2.06e-07 3.69e-07 1.62e-06 1.15e-06 2.23e-07 2.22e-07