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Genes within 1Mb (chr1:40080740:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 197229 sc-eQTL 8.87e-01 -0.0276 0.194 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -237073 sc-eQTL 6.53e-01 -0.0672 0.149 0.05 CD4_CTL L2
ENSG00000066136 NFYC -610908 sc-eQTL 6.99e-01 0.0795 0.205 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -264110 sc-eQTL 6.68e-01 -0.0571 0.133 0.05 CD4_CTL L2
ENSG00000084072 PPIE 388558 sc-eQTL 9.74e-01 0.00673 0.203 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -177496 sc-eQTL 9.99e-01 0.000337 0.203 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 503950 sc-eQTL 4.69e-01 -0.137 0.188 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 389255 sc-eQTL 8.49e-01 -0.0339 0.177 0.05 CD4_CTL L2
ENSG00000117000 RLF -80647 sc-eQTL 7.81e-01 0.0544 0.195 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -450833 sc-eQTL 8.97e-01 -0.0239 0.184 0.05 CD4_CTL L2
ENSG00000127603 MACF1 999424 sc-eQTL 4.43e-02 -0.308 0.152 0.05 CD4_CTL L2
ENSG00000131236 CAP1 40507 sc-eQTL 1.02e-02 0.336 0.13 0.05 CD4_CTL L2
ENSG00000131238 PPT1 -16987 sc-eQTL 5.49e-01 0.123 0.204 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -428001 sc-eQTL 6.66e-01 0.083 0.192 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -898948 sc-eQTL 7.68e-01 -0.0557 0.188 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -781623 sc-eQTL 9.44e-01 0.0114 0.161 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -369362 sc-eQTL 5.82e-01 -0.096 0.174 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -396550 sc-eQTL 3.47e-01 0.178 0.189 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -177227 sc-eQTL 2.13e-03 0.559 0.18 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -611326 sc-eQTL 4.55e-01 -0.144 0.192 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 197229 sc-eQTL 6.00e-01 -0.124 0.236 0.067 PB L2
ENSG00000049089 COL9A2 -237073 sc-eQTL 9.52e-01 0.0126 0.209 0.067 PB L2
ENSG00000066136 NFYC -610908 sc-eQTL 3.45e-02 0.475 0.222 0.067 PB L2
ENSG00000084070 SMAP2 -264110 sc-eQTL 4.37e-01 0.128 0.164 0.067 PB L2
ENSG00000084072 PPIE 388558 sc-eQTL 5.04e-01 -0.142 0.212 0.067 PB L2
ENSG00000084073 ZMPSTE24 -177496 sc-eQTL 5.04e-01 -0.129 0.193 0.067 PB L2
ENSG00000090621 PABPC4 503950 sc-eQTL 3.36e-01 0.124 0.128 0.067 PB L2
ENSG00000116985 BMP8B 291875 sc-eQTL 8.38e-01 -0.0304 0.148 0.067 PB L2
ENSG00000117000 RLF -80647 sc-eQTL 4.80e-01 0.169 0.238 0.067 PB L2
ENSG00000117010 ZNF684 -450833 sc-eQTL 7.48e-01 0.0639 0.199 0.067 PB L2
ENSG00000127603 MACF1 999424 sc-eQTL 6.12e-02 0.375 0.198 0.067 PB L2
ENSG00000131236 CAP1 40507 sc-eQTL 5.57e-01 0.117 0.2 0.067 PB L2
ENSG00000131238 PPT1 -16987 sc-eQTL 5.07e-01 0.145 0.218 0.067 PB L2
ENSG00000164002 EXO5 -428001 sc-eQTL 2.99e-01 0.227 0.218 0.067 PB L2
ENSG00000171793 CTPS1 -898948 sc-eQTL 3.15e-02 -0.491 0.225 0.067 PB L2
ENSG00000179862 CITED4 -781623 sc-eQTL 8.23e-01 -0.0457 0.203 0.067 PB L2
ENSG00000187815 ZFP69 -396550 sc-eQTL 5.86e-02 0.404 0.211 0.067 PB L2
ENSG00000198754 OXCT2 309392 sc-eQTL 1.79e-02 0.451 0.188 0.067 PB L2
ENSG00000259943 AL050341.2 -177227 sc-eQTL 7.27e-01 -0.0792 0.226 0.067 PB L2
ENSG00000272145 NFYC-AS1 -611326 sc-eQTL 5.57e-01 -0.126 0.213 0.067 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -610949 eQTL 0.0365 -0.0443 0.0211 0.001 0.0 0.0471
ENSG00000116981 NT5C1A 408702 pQTL 0.0346 0.0603 0.0285 0.0 0.0 0.0513
ENSG00000116983 HPCAL4 389255 eQTL 0.0397 -0.0709 0.0344 0.0 0.0 0.0471
ENSG00000117000 RLF -80647 eQTL 1.86e-12 0.188 0.0263 0.0 0.0 0.0471
ENSG00000117013 KCNQ4 -703047 eQTL 1.11e-02 -0.209 0.082 0.0 0.0 0.0471
ENSG00000131238 PPT1 -16987 eQTL 1.07e-28 0.73 0.0635 0.00138 0.0 0.0471
ENSG00000164002 EXO5 -428001 eQTL 3.03e-02 -0.108 0.0499 0.0 0.0 0.0471
ENSG00000168389 MFSD2A 125628 eQTL 0.0385 -0.0841 0.0406 0.0 0.0 0.0471
ENSG00000259943 AL050341.2 -177227 eQTL 7.06e-07 -0.227 0.0455 0.0 0.0 0.0471

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -177496 4.46e-06 2.5e-06 2.59e-07 1.71e-06 4.2e-07 1.19e-06 1.8e-06 4.23e-07 1.61e-06 7.42e-07 2.11e-06 1.47e-06 3.49e-06 1.31e-06 3.68e-07 1.15e-06 9.86e-07 2.18e-06 8.06e-07 7.68e-07 7.69e-07 2.76e-06 1.75e-06 9.91e-07 2.87e-06 9.68e-07 1.2e-06 1.05e-06 1.81e-06 1.83e-06 1.45e-06 2.42e-07 3.85e-07 1.26e-06 9.89e-07 6.26e-07 7.5e-07 3.15e-07 7.18e-07 3.66e-07 3.35e-07 2.94e-06 5.2e-07 8.98e-08 2.74e-07 2.74e-07 4.32e-07 2.11e-07 2.61e-07
ENSG00000117000 RLF -80647 1.08e-05 5.83e-06 6.38e-07 3.42e-06 1.38e-06 4.21e-06 7.51e-06 9.76e-07 5e-06 2.99e-06 6.76e-06 3.28e-06 9.88e-06 2.13e-06 1.27e-06 3.99e-06 1.92e-06 3.67e-06 1.44e-06 1.12e-06 2.83e-06 6.14e-06 4.63e-06 1.73e-06 7.58e-06 1.93e-06 2.28e-06 1.77e-06 4.84e-06 6.17e-06 2.65e-06 5.26e-07 5.46e-07 2.24e-06 2.07e-06 9.43e-07 9.81e-07 4.6e-07 8.6e-07 5.64e-07 2.8e-07 7.31e-06 8.05e-07 1.99e-07 3.75e-07 3.92e-07 1.06e-06 4.27e-07 3.41e-07
ENSG00000117016 \N -584942 8.7e-07 2.67e-07 7.45e-08 2.79e-07 1.07e-07 2.08e-07 3.94e-07 6.72e-08 2.04e-07 1.15e-07 2.68e-07 1.82e-07 4.11e-07 8.85e-08 6.93e-08 1.17e-07 6.81e-08 2.9e-07 1.62e-07 7.54e-08 1.59e-07 2.3e-07 2.2e-07 7.94e-08 3.7e-07 1.71e-07 1.48e-07 1.48e-07 1.87e-07 2.97e-07 1.76e-07 6.87e-08 5.41e-08 1.24e-07 1.67e-07 5.14e-08 6.77e-08 6.1e-08 5.25e-08 7.65e-08 4.4e-08 2.43e-07 3.09e-08 7.37e-09 3.66e-08 8.24e-09 1.03e-07 2.71e-09 5.49e-08
ENSG00000131238 PPT1 -16987 6.45e-05 1.73e-05 4.15e-06 9.13e-06 2.51e-06 1.46e-05 2.32e-05 2.2e-06 1.67e-05 7.65e-06 1.86e-05 6.98e-06 3.08e-05 6.13e-06 4.83e-06 1.03e-05 7.77e-06 1.7e-05 4.18e-06 3.14e-06 8.4e-06 2.06e-05 1.71e-05 4.97e-06 2.31e-05 5.22e-06 7.58e-06 5.98e-06 1.8e-05 1.54e-05 1.08e-05 1.01e-06 1.4e-06 4.69e-06 5.33e-06 2.84e-06 1.73e-06 2.06e-06 2.35e-06 2.03e-06 9.75e-07 2.19e-05 2.72e-06 1.85e-07 1.78e-06 1.72e-06 2.6e-06 6.16e-07 4.73e-07
ENSG00000259943 AL050341.2 -177227 4.46e-06 2.5e-06 2.77e-07 1.7e-06 4.2e-07 1.19e-06 1.8e-06 4.23e-07 1.61e-06 7.42e-07 2.11e-06 1.48e-06 3.49e-06 1.34e-06 3.84e-07 1.19e-06 1.01e-06 2.23e-06 7.93e-07 7.68e-07 7.87e-07 2.76e-06 1.75e-06 9.91e-07 2.93e-06 9.68e-07 1.19e-06 1.05e-06 1.8e-06 1.83e-06 1.45e-06 2.42e-07 3.85e-07 1.26e-06 1.01e-06 6.26e-07 7.5e-07 3.15e-07 7.04e-07 3.66e-07 3.35e-07 2.99e-06 5.2e-07 8.98e-08 2.74e-07 2.74e-07 4.32e-07 2.11e-07 2.61e-07