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Genes within 1Mb (chr1:40069667:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 186156 sc-eQTL 7.36e-01 -0.0649 0.192 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -248146 sc-eQTL 6.67e-01 -0.0636 0.148 0.05 CD4_CTL L2
ENSG00000066136 NFYC -621981 sc-eQTL 5.92e-01 0.109 0.203 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -275183 sc-eQTL 4.78e-01 -0.0937 0.132 0.05 CD4_CTL L2
ENSG00000084072 PPIE 377485 sc-eQTL 6.69e-01 -0.0861 0.201 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -188569 sc-eQTL 8.22e-01 -0.0454 0.201 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 492877 sc-eQTL 3.50e-01 -0.175 0.186 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 378182 sc-eQTL 7.82e-01 -0.0487 0.175 0.05 CD4_CTL L2
ENSG00000117000 RLF -91720 sc-eQTL 9.18e-01 0.02 0.193 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -461906 sc-eQTL 8.70e-01 0.03 0.183 0.05 CD4_CTL L2
ENSG00000127603 MACF1 988351 sc-eQTL 1.19e-02 -0.38 0.15 0.05 CD4_CTL L2
ENSG00000131236 CAP1 29434 sc-eQTL 1.11e-02 0.329 0.128 0.05 CD4_CTL L2
ENSG00000131238 PPT1 -28060 sc-eQTL 4.43e-01 0.156 0.202 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -439074 sc-eQTL 7.22e-01 0.0678 0.191 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -910021 sc-eQTL 9.68e-01 -0.00738 0.186 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -792696 sc-eQTL 8.70e-01 0.0261 0.16 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -380435 sc-eQTL 8.16e-01 -0.0403 0.173 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -407623 sc-eQTL 4.77e-01 0.133 0.187 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -188300 sc-eQTL 5.78e-04 0.619 0.177 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -622399 sc-eQTL 2.67e-01 -0.211 0.19 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 186156 sc-eQTL 5.50e-01 -0.145 0.241 0.063 PB L2
ENSG00000049089 COL9A2 -248146 sc-eQTL 9.26e-01 0.0199 0.213 0.063 PB L2
ENSG00000066136 NFYC -621981 sc-eQTL 4.10e-02 0.47 0.227 0.063 PB L2
ENSG00000084070 SMAP2 -275183 sc-eQTL 3.14e-01 0.169 0.167 0.063 PB L2
ENSG00000084072 PPIE 377485 sc-eQTL 5.41e-01 -0.133 0.217 0.063 PB L2
ENSG00000084073 ZMPSTE24 -188569 sc-eQTL 4.34e-01 -0.154 0.197 0.063 PB L2
ENSG00000090621 PABPC4 492877 sc-eQTL 3.78e-01 0.116 0.131 0.063 PB L2
ENSG00000116985 BMP8B 280802 sc-eQTL 7.39e-01 -0.0507 0.152 0.063 PB L2
ENSG00000117000 RLF -91720 sc-eQTL 4.05e-01 0.203 0.243 0.063 PB L2
ENSG00000117010 ZNF684 -461906 sc-eQTL 7.18e-01 0.0735 0.203 0.063 PB L2
ENSG00000127603 MACF1 988351 sc-eQTL 4.88e-02 0.402 0.202 0.063 PB L2
ENSG00000131236 CAP1 29434 sc-eQTL 3.78e-01 0.18 0.204 0.063 PB L2
ENSG00000131238 PPT1 -28060 sc-eQTL 4.56e-01 0.167 0.223 0.063 PB L2
ENSG00000164002 EXO5 -439074 sc-eQTL 4.38e-01 0.174 0.223 0.063 PB L2
ENSG00000171793 CTPS1 -910021 sc-eQTL 2.29e-02 -0.529 0.23 0.063 PB L2
ENSG00000179862 CITED4 -792696 sc-eQTL 7.53e-01 -0.0654 0.208 0.063 PB L2
ENSG00000187815 ZFP69 -407623 sc-eQTL 8.17e-02 0.38 0.216 0.063 PB L2
ENSG00000198754 OXCT2 298319 sc-eQTL 3.50e-02 0.411 0.193 0.063 PB L2
ENSG00000259943 AL050341.2 -188300 sc-eQTL 5.17e-01 -0.15 0.231 0.063 PB L2
ENSG00000272145 NFYC-AS1 -622399 sc-eQTL 5.82e-01 -0.12 0.218 0.063 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -622022 eQTL 0.0183 -0.049 0.0207 0.00161 0.0 0.0481
ENSG00000116981 NT5C1A 397629 pQTL 0.0278 0.0619 0.0281 0.0 0.0 0.0517
ENSG00000116983 HPCAL4 378182 eQTL 0.0346 -0.0715 0.0338 0.0 0.0 0.0481
ENSG00000117000 RLF -91720 eQTL 4.33e-11 0.173 0.0259 0.0 0.0 0.0481
ENSG00000117013 KCNQ4 -714120 eQTL 3.84e-02 -0.167 0.0805 0.0 0.0 0.0481
ENSG00000131238 PPT1 -28060 eQTL 8.13e-28 0.705 0.0625 0.00231 0.0 0.0481
ENSG00000164002 EXO5 -439074 eQTL 1.45e-02 -0.12 0.049 0.0 0.0 0.0481
ENSG00000259943 AL050341.2 -188300 eQTL 7.15e-06 -0.202 0.0448 0.0 0.0 0.0481

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -188569 4.49e-06 4.05e-06 9.94e-07 3.18e-06 8.3e-07 1.01e-06 4.31e-06 6.93e-07 2.42e-06 1.43e-06 3.55e-06 1.39e-06 4.58e-06 1.45e-06 1.35e-06 2.23e-06 1.56e-06 2.39e-06 1.28e-06 1.18e-06 1.97e-06 4.14e-06 3.58e-06 1.43e-06 4.77e-06 9.49e-07 2.53e-06 1.4e-06 3.41e-06 3.06e-06 2.03e-06 3.28e-07 7.52e-07 1.75e-06 2.03e-06 9.6e-07 8.45e-07 4.24e-07 9.31e-07 3.64e-07 2.8e-07 4.04e-06 4.37e-07 2.62e-08 3.35e-07 1.08e-06 8.29e-07 1.98e-07 1.41e-07
ENSG00000117000 RLF -91720 1.39e-05 1.3e-05 5.92e-06 7.82e-06 2.46e-06 6.22e-06 2.04e-05 2.53e-06 1.29e-05 6.3e-06 1.41e-05 6.11e-06 1.88e-05 4.46e-06 4.72e-06 8.68e-06 5.91e-06 8.09e-06 4.25e-06 4.78e-06 6.87e-06 1.31e-05 1.64e-05 4.9e-06 2.22e-05 3.98e-06 7.95e-06 5.4e-06 1.62e-05 1.1e-05 7.47e-06 9.97e-07 1.47e-06 4.03e-06 7.16e-06 3.97e-06 1.84e-06 2e-06 2.61e-06 1.5e-06 1.44e-06 1.88e-05 2.66e-06 1.52e-07 1.97e-06 2.84e-06 1.75e-06 8.94e-07 1.37e-06
ENSG00000117016 \N -596015 2.76e-07 1.25e-07 6.04e-08 2.24e-07 8.92e-08 1e-07 2.16e-07 5.33e-08 1.44e-07 4.74e-08 1.54e-07 8.55e-08 1.45e-07 6.76e-08 6.02e-08 7.36e-08 3.93e-08 1.51e-07 6.32e-08 4.23e-08 1.13e-07 1.27e-07 1.5e-07 4.05e-08 1.5e-07 1.19e-07 1.17e-07 9.92e-08 1.09e-07 1.03e-07 1.02e-07 3.76e-08 3.26e-08 8.7e-08 6.87e-08 3.65e-08 4.63e-08 9.13e-08 6.71e-08 3.37e-08 4.51e-08 1.33e-07 4.52e-08 0.0 5.43e-08 1.71e-08 1.23e-07 4.41e-09 4.74e-08
ENSG00000131238 PPT1 -28060 5.71e-05 5.04e-05 1.34e-05 1.84e-05 9.46e-06 2.08e-05 6.71e-05 7.81e-06 4.97e-05 2.54e-05 6.4e-05 2.53e-05 7.6e-05 2.04e-05 1.21e-05 3.66e-05 2.92e-05 3.86e-05 1.4e-05 1.2e-05 2.55e-05 6.11e-05 5.52e-05 1.47e-05 6.88e-05 1.34e-05 2.52e-05 1.89e-05 5.77e-05 3.28e-05 2.92e-05 2.32e-06 4.16e-06 9.25e-06 1.54e-05 9.02e-06 4.59e-06 4.86e-06 8.1e-06 4.62e-06 2.04e-06 6.42e-05 6.26e-06 5.78e-07 5.34e-06 7.07e-06 5.62e-06 2.8e-06 2.7e-06
ENSG00000259943 AL050341.2 -188300 4.54e-06 4.05e-06 9.94e-07 3.18e-06 8.14e-07 1.01e-06 4.27e-06 6.93e-07 2.42e-06 1.42e-06 3.55e-06 1.39e-06 4.58e-06 1.45e-06 1.33e-06 2.21e-06 1.56e-06 2.39e-06 1.28e-06 1.21e-06 1.97e-06 4.14e-06 3.6e-06 1.43e-06 4.75e-06 9.49e-07 2.55e-06 1.46e-06 3.41e-06 3.09e-06 2.05e-06 3.27e-07 7.52e-07 1.75e-06 2.01e-06 9.6e-07 8.45e-07 4.24e-07 9.12e-07 3.64e-07 2.79e-07 4.04e-06 4.37e-07 2.62e-08 3.35e-07 1.05e-06 8e-07 1.98e-07 1.41e-07