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Genes within 1Mb (chr1:40066356:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 182845 sc-eQTL 7.18e-01 -0.0687 0.19 0.052 CD4_CTL L2
ENSG00000049089 COL9A2 -251457 sc-eQTL 7.21e-01 -0.0524 0.146 0.052 CD4_CTL L2
ENSG00000066136 NFYC -625292 sc-eQTL 6.15e-01 0.101 0.201 0.052 CD4_CTL L2
ENSG00000084070 SMAP2 -278494 sc-eQTL 4.10e-01 -0.108 0.13 0.052 CD4_CTL L2
ENSG00000084072 PPIE 374174 sc-eQTL 6.08e-01 -0.102 0.199 0.052 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -191880 sc-eQTL 7.49e-01 -0.0638 0.199 0.052 CD4_CTL L2
ENSG00000090621 PABPC4 489566 sc-eQTL 3.91e-01 -0.158 0.184 0.052 CD4_CTL L2
ENSG00000116983 HPCAL4 374871 sc-eQTL 8.03e-01 -0.0434 0.174 0.052 CD4_CTL L2
ENSG00000117000 RLF -95031 sc-eQTL 9.05e-01 0.0227 0.191 0.052 CD4_CTL L2
ENSG00000117010 ZNF684 -465217 sc-eQTL 7.62e-01 0.0547 0.181 0.052 CD4_CTL L2
ENSG00000127603 MACF1 985040 sc-eQTL 1.32e-02 -0.37 0.148 0.052 CD4_CTL L2
ENSG00000131236 CAP1 26123 sc-eQTL 1.25e-02 0.32 0.127 0.052 CD4_CTL L2
ENSG00000131238 PPT1 -31371 sc-eQTL 5.19e-01 0.13 0.2 0.052 CD4_CTL L2
ENSG00000164002 EXO5 -442385 sc-eQTL 7.88e-01 0.0507 0.188 0.052 CD4_CTL L2
ENSG00000171793 CTPS1 -913332 sc-eQTL 9.08e-01 0.0214 0.184 0.052 CD4_CTL L2
ENSG00000179862 CITED4 -796007 sc-eQTL 8.60e-01 0.0279 0.158 0.052 CD4_CTL L2
ENSG00000187801 ZFP69B -383746 sc-eQTL 8.33e-01 -0.036 0.171 0.052 CD4_CTL L2
ENSG00000187815 ZFP69 -410934 sc-eQTL 4.37e-01 0.144 0.185 0.052 CD4_CTL L2
ENSG00000259943 AL050341.2 -191611 sc-eQTL 4.50e-04 0.624 0.175 0.052 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -625710 sc-eQTL 3.33e-01 -0.182 0.188 0.052 CD4_CTL L2
ENSG00000043514 TRIT1 182845 sc-eQTL 7.61e-01 -0.059 0.193 0.051 NK_CD56bright L2
ENSG00000066136 NFYC -625292 sc-eQTL 4.61e-01 -0.15 0.203 0.051 NK_CD56bright L2
ENSG00000084070 SMAP2 -278494 sc-eQTL 5.37e-01 -0.0821 0.133 0.051 NK_CD56bright L2
ENSG00000084072 PPIE 374174 sc-eQTL 1.46e-02 -0.442 0.179 0.051 NK_CD56bright L2
ENSG00000084073 ZMPSTE24 -191880 sc-eQTL 7.79e-01 -0.0571 0.204 0.051 NK_CD56bright L2
ENSG00000090621 PABPC4 489566 sc-eQTL 6.00e-01 -0.0911 0.173 0.051 NK_CD56bright L2
ENSG00000116985 BMP8B 277491 sc-eQTL 3.90e-01 -0.149 0.173 0.051 NK_CD56bright L2
ENSG00000117000 RLF -95031 sc-eQTL 7.10e-01 0.064 0.171 0.051 NK_CD56bright L2
ENSG00000117010 ZNF684 -465217 sc-eQTL 7.44e-01 -0.0631 0.193 0.051 NK_CD56bright L2
ENSG00000127603 MACF1 985040 sc-eQTL 1.14e-01 0.217 0.137 0.051 NK_CD56bright L2
ENSG00000131236 CAP1 26123 sc-eQTL 2.94e-05 0.593 0.139 0.051 NK_CD56bright L2
ENSG00000131238 PPT1 -31371 sc-eQTL 4.17e-01 0.156 0.191 0.051 NK_CD56bright L2
ENSG00000164002 EXO5 -442385 sc-eQTL 1.26e-01 -0.285 0.185 0.051 NK_CD56bright L2
ENSG00000171793 CTPS1 -913332 sc-eQTL 2.69e-01 -0.188 0.17 0.051 NK_CD56bright L2
ENSG00000179862 CITED4 -796007 sc-eQTL 2.79e-01 -0.192 0.177 0.051 NK_CD56bright L2
ENSG00000187815 ZFP69 -410934 sc-eQTL 4.78e-01 0.135 0.189 0.051 NK_CD56bright L2
ENSG00000259943 AL050341.2 -191611 sc-eQTL 2.86e-01 0.207 0.194 0.051 NK_CD56bright L2
ENSG00000272145 NFYC-AS1 -625710 sc-eQTL 7.04e-01 0.0715 0.188 0.051 NK_CD56bright L2
ENSG00000043514 TRIT1 182845 sc-eQTL 7.06e-01 -0.084 0.222 0.067 PB L2
ENSG00000049089 COL9A2 -251457 sc-eQTL 8.38e-01 0.0402 0.196 0.067 PB L2
ENSG00000066136 NFYC -625292 sc-eQTL 5.69e-02 0.403 0.21 0.067 PB L2
ENSG00000084070 SMAP2 -278494 sc-eQTL 1.32e-01 0.232 0.153 0.067 PB L2
ENSG00000084072 PPIE 374174 sc-eQTL 5.08e-01 -0.133 0.199 0.067 PB L2
ENSG00000084073 ZMPSTE24 -191880 sc-eQTL 3.96e-01 -0.154 0.181 0.067 PB L2
ENSG00000090621 PABPC4 489566 sc-eQTL 4.26e-01 0.0966 0.121 0.067 PB L2
ENSG00000116985 BMP8B 277491 sc-eQTL 5.41e-01 -0.0855 0.139 0.067 PB L2
ENSG00000117000 RLF -95031 sc-eQTL 5.16e-01 0.146 0.224 0.067 PB L2
ENSG00000117010 ZNF684 -465217 sc-eQTL 8.41e-01 0.0377 0.187 0.067 PB L2
ENSG00000127603 MACF1 985040 sc-eQTL 6.20e-02 0.351 0.186 0.067 PB L2
ENSG00000131236 CAP1 26123 sc-eQTL 2.98e-01 0.196 0.187 0.067 PB L2
ENSG00000131238 PPT1 -31371 sc-eQTL 7.11e-01 0.0763 0.205 0.067 PB L2
ENSG00000164002 EXO5 -442385 sc-eQTL 3.40e-01 0.197 0.205 0.067 PB L2
ENSG00000171793 CTPS1 -913332 sc-eQTL 3.17e-02 -0.461 0.212 0.067 PB L2
ENSG00000179862 CITED4 -796007 sc-eQTL 6.43e-01 -0.0887 0.191 0.067 PB L2
ENSG00000187815 ZFP69 -410934 sc-eQTL 6.12e-02 0.376 0.199 0.067 PB L2
ENSG00000198754 OXCT2 295008 sc-eQTL 1.25e-01 0.276 0.179 0.067 PB L2
ENSG00000259943 AL050341.2 -191611 sc-eQTL 5.30e-01 -0.134 0.213 0.067 PB L2
ENSG00000272145 NFYC-AS1 -625710 sc-eQTL 8.39e-01 -0.041 0.201 0.067 PB L2
ENSG00000043514 TRIT1 182845 sc-eQTL 6.25e-01 -0.09 0.184 0.05 Pro_T L2
ENSG00000066136 NFYC -625292 sc-eQTL 5.75e-01 0.0956 0.17 0.05 Pro_T L2
ENSG00000084070 SMAP2 -278494 sc-eQTL 3.89e-01 0.126 0.146 0.05 Pro_T L2
ENSG00000084072 PPIE 374174 sc-eQTL 7.51e-01 -0.0538 0.169 0.05 Pro_T L2
ENSG00000084073 ZMPSTE24 -191880 sc-eQTL 9.73e-01 -0.00488 0.145 0.05 Pro_T L2
ENSG00000090621 PABPC4 489566 sc-eQTL 6.56e-01 -0.0578 0.129 0.05 Pro_T L2
ENSG00000116985 BMP8B 277491 sc-eQTL 3.70e-01 -0.0964 0.107 0.05 Pro_T L2
ENSG00000117000 RLF -95031 sc-eQTL 9.95e-01 -0.00119 0.176 0.05 Pro_T L2
ENSG00000117010 ZNF684 -465217 sc-eQTL 1.84e-01 0.233 0.175 0.05 Pro_T L2
ENSG00000127603 MACF1 985040 sc-eQTL 8.41e-01 0.0258 0.128 0.05 Pro_T L2
ENSG00000131236 CAP1 26123 sc-eQTL 4.87e-02 0.277 0.14 0.05 Pro_T L2
ENSG00000131238 PPT1 -31371 sc-eQTL 4.12e-01 0.13 0.158 0.05 Pro_T L2
ENSG00000164002 EXO5 -442385 sc-eQTL 4.67e-01 -0.137 0.187 0.05 Pro_T L2
ENSG00000168389 MFSD2A 111244 sc-eQTL 3.78e-01 0.119 0.134 0.05 Pro_T L2
ENSG00000171793 CTPS1 -913332 sc-eQTL 4.62e-01 0.123 0.166 0.05 Pro_T L2
ENSG00000179862 CITED4 -796007 sc-eQTL 9.94e-01 0.00126 0.157 0.05 Pro_T L2
ENSG00000187801 ZFP69B -383746 sc-eQTL 4.11e-01 -0.128 0.155 0.05 Pro_T L2
ENSG00000187815 ZFP69 -410934 sc-eQTL 6.63e-01 0.0773 0.177 0.05 Pro_T L2
ENSG00000198754 OXCT2 295008 sc-eQTL 5.45e-01 -0.0552 0.0911 0.05 Pro_T L2
ENSG00000259943 AL050341.2 -191611 sc-eQTL 1.68e-04 0.663 0.173 0.05 Pro_T L2
ENSG00000272145 NFYC-AS1 -625710 sc-eQTL 3.26e-01 -0.17 0.173 0.05 Pro_T L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -625333 eQTL 0.0172 -0.0493 0.0207 0.00164 0.0 0.0486
ENSG00000116981 NT5C1A 394318 pQTL 0.0241 0.0634 0.0281 0.00104 0.0 0.052
ENSG00000116983 HPCAL4 374871 eQTL 0.0411 -0.0688 0.0336 0.0 0.0 0.0486
ENSG00000117000 RLF -95031 eQTL 4.69e-11 0.172 0.0258 0.0 0.0 0.0486
ENSG00000117013 KCNQ4 -717431 eQTL 3.74e-02 -0.167 0.0802 0.0 0.0 0.0486
ENSG00000131238 PPT1 -31371 eQTL 8.42e-28 0.702 0.0622 0.00181 0.0 0.0486
ENSG00000164002 EXO5 -442385 eQTL 1.90e-02 -0.115 0.0488 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -191611 eQTL 8.56e-06 -0.2 0.0446 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -191880 9.17e-06 1.24e-05 1.51e-06 8.21e-06 2.36e-06 2.7e-06 1.11e-05 1.69e-06 7.75e-06 4.75e-06 1.39e-05 4.89e-06 1.48e-05 3.66e-06 1.91e-06 6.45e-06 3.76e-06 7.53e-06 2.55e-06 2.65e-06 4.72e-06 1.01e-05 9.02e-06 3.39e-06 1.58e-05 3.33e-06 5.62e-06 3.74e-06 8.02e-06 9.11e-06 5.4e-06 9.9e-07 7.23e-07 2.93e-06 4.83e-06 2.53e-06 1.35e-06 1.35e-06 1.46e-06 7.91e-07 8.6e-07 1.3e-05 1.38e-06 1.61e-07 8.47e-07 1.71e-06 1.05e-06 6.12e-07 6e-07
ENSG00000117000 RLF -95031 1.41e-05 1.81e-05 2.86e-06 1.1e-05 2.45e-06 5.07e-06 1.96e-05 2.43e-06 1.22e-05 6.44e-06 2.06e-05 6.86e-06 2.46e-05 6.35e-06 3.71e-06 9.28e-06 6.37e-06 1.22e-05 3.54e-06 3.13e-06 6.88e-06 1.42e-05 1.62e-05 5.06e-06 2.66e-05 4.94e-06 7.74e-06 6.08e-06 1.38e-05 1.38e-05 9.4e-06 1.03e-06 1.21e-06 3.76e-06 6.48e-06 3.35e-06 1.83e-06 2e-06 2.06e-06 9.84e-07 1.1e-06 1.89e-05 2.34e-06 2.2e-07 1.76e-06 2.79e-06 1.74e-06 6.52e-07 4.74e-07
ENSG00000117016 \N -599326 1.3e-06 1.48e-06 3.03e-07 1.7e-06 3.4e-07 4.49e-07 1.55e-06 2.04e-07 1.2e-06 4.03e-07 2.04e-06 5.86e-07 2.46e-06 2.89e-07 4.42e-07 8.48e-07 7.77e-07 6.58e-07 8.15e-07 6.33e-07 4.99e-07 1.87e-06 8.68e-07 6.47e-07 2.3e-06 3.91e-07 9.72e-07 6.46e-07 1.25e-06 1.29e-06 6.18e-07 1.87e-07 4.55e-08 6.89e-07 6.12e-07 4.42e-07 7.14e-07 1.03e-07 3.93e-07 3.33e-07 1.15e-07 1.55e-06 5.77e-08 1.3e-07 1.88e-07 7.84e-08 1.26e-07 1.22e-08 5.47e-08
ENSG00000131238 PPT1 -31371 3.04e-05 3.01e-05 5.89e-06 1.49e-05 5.58e-06 1.17e-05 3.74e-05 4.2e-06 2.6e-05 1.36e-05 3.52e-05 1.52e-05 4.26e-05 1.28e-05 6.2e-06 1.67e-05 1.55e-05 2.33e-05 6.78e-06 5.62e-06 1.31e-05 2.96e-05 2.96e-05 8.4e-06 4.05e-05 7.92e-06 1.3e-05 1.15e-05 2.89e-05 2.32e-05 1.68e-05 1.59e-06 2.41e-06 6.71e-06 1.11e-05 5.47e-06 2.82e-06 3.12e-06 4.25e-06 2.92e-06 1.67e-06 3.42e-05 3.25e-06 3.24e-07 2.59e-06 3.75e-06 3.79e-06 1.69e-06 1.5e-06
ENSG00000259943 AL050341.2 -191611 9.17e-06 1.24e-05 1.51e-06 8.26e-06 2.36e-06 2.7e-06 1.11e-05 1.69e-06 7.75e-06 4.75e-06 1.39e-05 4.89e-06 1.48e-05 3.63e-06 2e-06 6.51e-06 3.76e-06 7.53e-06 2.55e-06 2.65e-06 4.64e-06 1.02e-05 9.02e-06 3.39e-06 1.6e-05 3.33e-06 5.79e-06 3.74e-06 8.17e-06 9.11e-06 5.4e-06 9.9e-07 7.23e-07 2.93e-06 4.83e-06 2.53e-06 1.35e-06 1.35e-06 1.56e-06 8.05e-07 8.6e-07 1.3e-05 1.38e-06 1.61e-07 8.32e-07 1.71e-06 1.05e-06 6.12e-07 6e-07