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Genes within 1Mb (chr1:40057410:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 173899 sc-eQTL 7.36e-01 -0.0649 0.192 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -260403 sc-eQTL 6.67e-01 -0.0636 0.148 0.05 CD4_CTL L2
ENSG00000066136 NFYC -634238 sc-eQTL 5.92e-01 0.109 0.203 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -287440 sc-eQTL 4.78e-01 -0.0937 0.132 0.05 CD4_CTL L2
ENSG00000084072 PPIE 365228 sc-eQTL 6.69e-01 -0.0861 0.201 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -200826 sc-eQTL 8.22e-01 -0.0454 0.201 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 480620 sc-eQTL 3.50e-01 -0.175 0.186 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 365925 sc-eQTL 7.82e-01 -0.0487 0.175 0.05 CD4_CTL L2
ENSG00000117000 RLF -103977 sc-eQTL 9.18e-01 0.02 0.193 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -474163 sc-eQTL 8.70e-01 0.03 0.183 0.05 CD4_CTL L2
ENSG00000127603 MACF1 976094 sc-eQTL 1.19e-02 -0.38 0.15 0.05 CD4_CTL L2
ENSG00000131236 CAP1 17177 sc-eQTL 1.11e-02 0.329 0.128 0.05 CD4_CTL L2
ENSG00000131238 PPT1 -40317 sc-eQTL 4.43e-01 0.156 0.202 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -451331 sc-eQTL 7.22e-01 0.0678 0.191 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -922278 sc-eQTL 9.68e-01 -0.00738 0.186 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -804953 sc-eQTL 8.70e-01 0.0261 0.16 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -392692 sc-eQTL 8.16e-01 -0.0403 0.173 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -419880 sc-eQTL 4.77e-01 0.133 0.187 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -200557 sc-eQTL 5.78e-04 0.619 0.177 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -634656 sc-eQTL 2.67e-01 -0.211 0.19 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 173899 sc-eQTL 5.50e-01 -0.145 0.241 0.063 PB L2
ENSG00000049089 COL9A2 -260403 sc-eQTL 9.26e-01 0.0199 0.213 0.063 PB L2
ENSG00000066136 NFYC -634238 sc-eQTL 4.10e-02 0.47 0.227 0.063 PB L2
ENSG00000084070 SMAP2 -287440 sc-eQTL 3.14e-01 0.169 0.167 0.063 PB L2
ENSG00000084072 PPIE 365228 sc-eQTL 5.41e-01 -0.133 0.217 0.063 PB L2
ENSG00000084073 ZMPSTE24 -200826 sc-eQTL 4.34e-01 -0.154 0.197 0.063 PB L2
ENSG00000090621 PABPC4 480620 sc-eQTL 3.78e-01 0.116 0.131 0.063 PB L2
ENSG00000116985 BMP8B 268545 sc-eQTL 7.39e-01 -0.0507 0.152 0.063 PB L2
ENSG00000117000 RLF -103977 sc-eQTL 4.05e-01 0.203 0.243 0.063 PB L2
ENSG00000117010 ZNF684 -474163 sc-eQTL 7.18e-01 0.0735 0.203 0.063 PB L2
ENSG00000127603 MACF1 976094 sc-eQTL 4.88e-02 0.402 0.202 0.063 PB L2
ENSG00000131236 CAP1 17177 sc-eQTL 3.78e-01 0.18 0.204 0.063 PB L2
ENSG00000131238 PPT1 -40317 sc-eQTL 4.56e-01 0.167 0.223 0.063 PB L2
ENSG00000164002 EXO5 -451331 sc-eQTL 4.38e-01 0.174 0.223 0.063 PB L2
ENSG00000171793 CTPS1 -922278 sc-eQTL 2.29e-02 -0.529 0.23 0.063 PB L2
ENSG00000179862 CITED4 -804953 sc-eQTL 7.53e-01 -0.0654 0.208 0.063 PB L2
ENSG00000187815 ZFP69 -419880 sc-eQTL 8.17e-02 0.38 0.216 0.063 PB L2
ENSG00000198754 OXCT2 286062 sc-eQTL 3.50e-02 0.411 0.193 0.063 PB L2
ENSG00000259943 AL050341.2 -200557 sc-eQTL 5.17e-01 -0.15 0.231 0.063 PB L2
ENSG00000272145 NFYC-AS1 -634656 sc-eQTL 5.82e-01 -0.12 0.218 0.063 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000066136 NFYC -634279 eQTL 0.0161 -0.0498 0.0207 0.00171 0.0 0.0486
ENSG00000116981 NT5C1A 385372 pQTL 0.0254 0.063 0.0282 0.00102 0.0 0.052
ENSG00000116983 HPCAL4 365925 eQTL 0.0407 -0.069 0.0337 0.0 0.0 0.0486
ENSG00000117000 RLF -103977 eQTL 5.00e-11 0.172 0.0258 0.0 0.0 0.0486
ENSG00000117013 KCNQ4 -726377 eQTL 3.80e-02 -0.167 0.0803 0.0 0.0 0.0486
ENSG00000131238 PPT1 -40317 eQTL 9.02e-28 0.702 0.0623 0.00184 0.0 0.0486
ENSG00000164002 EXO5 -451331 eQTL 1.86e-02 -0.115 0.0488 0.0 0.0 0.0486
ENSG00000259943 AL050341.2 -200557 eQTL 8.69e-06 -0.2 0.0446 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -200826 3.99e-06 5.06e-06 9.35e-07 3.08e-06 1.27e-06 1.07e-06 4.13e-06 1.03e-06 2.74e-06 1.41e-06 4.65e-06 2.56e-06 7.24e-06 2.4e-06 1.35e-06 2.01e-06 1.79e-06 2.08e-06 1.45e-06 8.96e-07 1.39e-06 4.1e-06 3.58e-06 1.22e-06 8.07e-06 1.33e-06 2.1e-06 1.72e-06 4.26e-06 4.23e-06 2.01e-06 2.5e-07 4e-07 1.55e-06 2.05e-06 8.52e-07 7.82e-07 4.49e-07 1.35e-06 4.07e-07 1.67e-07 5.76e-06 5.88e-07 2.09e-07 4.35e-07 7.78e-07 6.26e-07 1.99e-07 1.55e-07
ENSG00000117000 RLF -103977 8.88e-06 1.38e-05 1.56e-06 7.03e-06 2.35e-06 4.58e-06 1.14e-05 1.77e-06 9.91e-06 4.99e-06 1.33e-05 5.63e-06 1.71e-05 4.25e-06 2.82e-06 6.38e-06 4.9e-06 6.85e-06 2.99e-06 2.82e-06 4.55e-06 1.03e-05 9.26e-06 2.85e-06 2.22e-05 2.75e-06 5.56e-06 3.3e-06 1.24e-05 1.05e-05 6.37e-06 8.06e-07 8.01e-07 2.86e-06 5.44e-06 2.07e-06 1.31e-06 1.83e-06 1.36e-06 9.42e-07 7.78e-07 1.45e-05 1.23e-06 4.08e-07 7.98e-07 1.8e-06 9.03e-07 7.11e-07 4.4e-07
ENSG00000117016 \N -608272 3.02e-07 1.83e-07 5.82e-08 3.05e-07 1.07e-07 8.33e-08 3.25e-07 5.78e-08 1.59e-07 6.08e-08 2.47e-07 1.23e-07 2.55e-07 8.85e-08 1.18e-07 8.71e-08 4.31e-08 1.64e-07 9.19e-08 6.29e-08 1.24e-07 1.89e-07 1.89e-07 2.87e-08 3.7e-07 1.14e-07 1.22e-07 1.36e-07 1.32e-07 2.01e-07 1.26e-07 3.66e-08 3.66e-08 9.08e-08 1.07e-07 3.94e-08 5.3e-08 8.63e-08 5.69e-08 5.72e-08 5.04e-08 2.5e-07 5.24e-08 2.09e-08 4e-08 9.65e-09 1.22e-07 1.91e-09 4.88e-08
ENSG00000131238 PPT1 -40317 2.1e-05 2.74e-05 4.32e-06 1.32e-05 4.08e-06 1.13e-05 3.22e-05 3.51e-06 2.24e-05 1.03e-05 2.91e-05 1.14e-05 3.83e-05 1.13e-05 5.59e-06 1.27e-05 1.29e-05 1.81e-05 6.78e-06 5.3e-06 9.59e-06 2.43e-05 2.34e-05 6.36e-06 3.7e-05 5.48e-06 9.85e-06 9.09e-06 2.69e-05 2.35e-05 1.46e-05 1.67e-06 1.91e-06 5.43e-06 9.74e-06 4.51e-06 2.36e-06 2.86e-06 3.4e-06 3.08e-06 1.58e-06 2.87e-05 2.65e-06 3.84e-07 2.12e-06 2.96e-06 3.43e-06 1.38e-06 1.3e-06
ENSG00000259943 AL050341.2 -200557 3.99e-06 5.06e-06 9.35e-07 3.14e-06 1.31e-06 1.07e-06 4.17e-06 1.03e-06 2.78e-06 1.43e-06 4.71e-06 2.58e-06 7.44e-06 2.4e-06 1.35e-06 2.01e-06 1.81e-06 2.03e-06 1.48e-06 9.15e-07 1.39e-06 4.1e-06 3.58e-06 1.24e-06 8.14e-06 1.33e-06 2.1e-06 1.7e-06 4.32e-06 4.23e-06 2.01e-06 2.51e-07 4e-07 1.55e-06 2.09e-06 8.52e-07 7.82e-07 4.66e-07 1.35e-06 4.07e-07 1.67e-07 5.76e-06 5.88e-07 2.09e-07 4.2e-07 7.78e-07 6.27e-07 1.99e-07 1.41e-07