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Genes within 1Mb (chr1:40050528:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 167017 sc-eQTL 7.36e-01 -0.0649 0.192 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -267285 sc-eQTL 6.67e-01 -0.0636 0.148 0.05 CD4_CTL L2
ENSG00000066136 NFYC -641120 sc-eQTL 5.92e-01 0.109 0.203 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -294322 sc-eQTL 4.78e-01 -0.0937 0.132 0.05 CD4_CTL L2
ENSG00000084072 PPIE 358346 sc-eQTL 6.69e-01 -0.0861 0.201 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -207708 sc-eQTL 8.22e-01 -0.0454 0.201 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 473738 sc-eQTL 3.50e-01 -0.175 0.186 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 359043 sc-eQTL 7.82e-01 -0.0487 0.175 0.05 CD4_CTL L2
ENSG00000117000 RLF -110859 sc-eQTL 9.18e-01 0.02 0.193 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -481045 sc-eQTL 8.70e-01 0.03 0.183 0.05 CD4_CTL L2
ENSG00000127603 MACF1 969212 sc-eQTL 1.19e-02 -0.38 0.15 0.05 CD4_CTL L2
ENSG00000131236 CAP1 10295 sc-eQTL 1.11e-02 0.329 0.128 0.05 CD4_CTL L2
ENSG00000131238 PPT1 -47199 sc-eQTL 4.43e-01 0.156 0.202 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -458213 sc-eQTL 7.22e-01 0.0678 0.191 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -929160 sc-eQTL 9.68e-01 -0.00738 0.186 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -811835 sc-eQTL 8.70e-01 0.0261 0.16 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -399574 sc-eQTL 8.16e-01 -0.0403 0.173 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -426762 sc-eQTL 4.77e-01 0.133 0.187 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -207439 sc-eQTL 5.78e-04 0.619 0.177 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -641538 sc-eQTL 2.67e-01 -0.211 0.19 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 167017 sc-eQTL 5.50e-01 -0.145 0.241 0.063 PB L2
ENSG00000049089 COL9A2 -267285 sc-eQTL 9.26e-01 0.0199 0.213 0.063 PB L2
ENSG00000066136 NFYC -641120 sc-eQTL 4.10e-02 0.47 0.227 0.063 PB L2
ENSG00000084070 SMAP2 -294322 sc-eQTL 3.14e-01 0.169 0.167 0.063 PB L2
ENSG00000084072 PPIE 358346 sc-eQTL 5.41e-01 -0.133 0.217 0.063 PB L2
ENSG00000084073 ZMPSTE24 -207708 sc-eQTL 4.34e-01 -0.154 0.197 0.063 PB L2
ENSG00000090621 PABPC4 473738 sc-eQTL 3.78e-01 0.116 0.131 0.063 PB L2
ENSG00000116985 BMP8B 261663 sc-eQTL 7.39e-01 -0.0507 0.152 0.063 PB L2
ENSG00000117000 RLF -110859 sc-eQTL 4.05e-01 0.203 0.243 0.063 PB L2
ENSG00000117010 ZNF684 -481045 sc-eQTL 7.18e-01 0.0735 0.203 0.063 PB L2
ENSG00000127603 MACF1 969212 sc-eQTL 4.88e-02 0.402 0.202 0.063 PB L2
ENSG00000131236 CAP1 10295 sc-eQTL 3.78e-01 0.18 0.204 0.063 PB L2
ENSG00000131238 PPT1 -47199 sc-eQTL 4.56e-01 0.167 0.223 0.063 PB L2
ENSG00000164002 EXO5 -458213 sc-eQTL 4.38e-01 0.174 0.223 0.063 PB L2
ENSG00000171793 CTPS1 -929160 sc-eQTL 2.29e-02 -0.529 0.23 0.063 PB L2
ENSG00000179862 CITED4 -811835 sc-eQTL 7.53e-01 -0.0654 0.208 0.063 PB L2
ENSG00000187815 ZFP69 -426762 sc-eQTL 8.17e-02 0.38 0.216 0.063 PB L2
ENSG00000198754 OXCT2 279180 sc-eQTL 3.50e-02 0.411 0.193 0.063 PB L2
ENSG00000259943 AL050341.2 -207439 sc-eQTL 5.17e-01 -0.15 0.231 0.063 PB L2
ENSG00000272145 NFYC-AS1 -641538 sc-eQTL 5.82e-01 -0.12 0.218 0.063 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -207708 4.35e-06 2.05e-06 2.42e-07 1.3e-06 3.51e-07 7.11e-07 1.19e-06 3.69e-07 1.72e-06 7.18e-07 2.05e-06 7.5e-07 2.6e-06 4.76e-07 5.65e-07 1.04e-06 9.34e-07 1.17e-06 5.81e-07 6.4e-07 6.64e-07 1.97e-06 1.14e-06 5.58e-07 2.41e-06 6.9e-07 1.02e-06 9.6e-07 1.66e-06 1.3e-06 8.22e-07 1.89e-07 2.85e-07 5.87e-07 6.12e-07 4.57e-07 7.3e-07 2.97e-07 4.53e-07 2.93e-07 2.97e-07 2.23e-06 4.43e-07 4.16e-08 2.98e-07 1.73e-07 2.39e-07 5.28e-08 1.7e-07
ENSG00000117000 \N -110859 1.07e-05 5.83e-06 6.42e-07 3.52e-06 1.1e-06 3.79e-06 6.12e-06 9.62e-07 4.83e-06 2.88e-06 5.25e-06 3.3e-06 8.47e-06 1.94e-06 1.41e-06 3.99e-06 1.83e-06 3.98e-06 1.55e-06 9.15e-07 2.89e-06 6.84e-06 4.46e-06 1.52e-06 6.5e-06 1.62e-06 2.33e-06 1.87e-06 4.4e-06 4.43e-06 2.83e-06 4.91e-07 7.32e-07 1.52e-06 2.24e-06 9.03e-07 9.86e-07 4.76e-07 1.04e-06 4.26e-07 1.51e-07 7.23e-06 1.04e-06 1.66e-07 4.19e-07 3.4e-07 8.71e-07 2.08e-07 3.21e-07
ENSG00000117016 \N -615154 3.62e-07 1.27e-07 4.08e-08 1.82e-07 9.21e-08 8.37e-08 1.53e-07 5.19e-08 1.45e-07 5.42e-08 1.6e-07 8.36e-08 1.41e-07 6.76e-08 6e-08 7.36e-08 3.9e-08 1.21e-07 5.97e-08 4e-08 1.21e-07 1.27e-07 1.39e-07 2.95e-08 1.37e-07 1.14e-07 1.07e-07 9.36e-08 1.09e-07 1.03e-07 9.91e-08 3.64e-08 3.66e-08 8.56e-08 7.02e-08 3.6e-08 5.3e-08 9.03e-08 6.86e-08 3.8e-08 4.36e-08 1.4e-07 2.75e-08 1.43e-08 4.25e-08 1.86e-08 1.21e-07 1.88e-09 4.94e-08
ENSG00000131238 \N -47199 4.47e-05 1.43e-05 2.44e-06 7.65e-06 2.57e-06 9.53e-06 1.83e-05 1.85e-06 1.37e-05 6.12e-06 1.41e-05 5.48e-06 2.44e-05 4.15e-06 3.35e-06 8.95e-06 5.51e-06 1.2e-05 3.37e-06 2.91e-06 6.47e-06 1.52e-05 1.08e-05 3.41e-06 1.73e-05 4.29e-06 6.81e-06 4.85e-06 1.45e-05 1.05e-05 7.63e-06 9.76e-07 1.1e-06 3.58e-06 4.6e-06 2.67e-06 1.72e-06 2.02e-06 2.25e-06 9.98e-07 8.6e-07 1.76e-05 2.54e-06 1.85e-07 7.77e-07 1.48e-06 1.82e-06 7.44e-07 4.32e-07
ENSG00000259943 \N -207439 4.27e-06 2.05e-06 2.42e-07 1.33e-06 3.44e-07 7.11e-07 1.23e-06 3.62e-07 1.71e-06 7.18e-07 2.01e-06 7.5e-07 2.58e-06 4.76e-07 5.65e-07 1.04e-06 9.34e-07 1.16e-06 5.83e-07 6.4e-07 6.64e-07 1.97e-06 1.14e-06 5.58e-07 2.41e-06 6.9e-07 1.02e-06 9.43e-07 1.66e-06 1.26e-06 8.22e-07 1.89e-07 2.85e-07 5.6e-07 6.12e-07 4.57e-07 7.3e-07 2.97e-07 4.53e-07 2.93e-07 2.86e-07 2.22e-06 4.43e-07 4.16e-08 2.98e-07 1.85e-07 2.39e-07 5.28e-08 1.7e-07