Genes within 1Mb (chr1:40044760:C:T):

View on , UCSC , GTEx , gnomAD


Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 161249 sc-eQTL 7.36e-01 -0.0649 0.192 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -273053 sc-eQTL 6.67e-01 -0.0636 0.148 0.05 CD4_CTL L2
ENSG00000066136 NFYC -646888 sc-eQTL 5.92e-01 0.109 0.203 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -300090 sc-eQTL 4.78e-01 -0.0937 0.132 0.05 CD4_CTL L2
ENSG00000084072 PPIE 352578 sc-eQTL 6.69e-01 -0.0861 0.201 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -213476 sc-eQTL 8.22e-01 -0.0454 0.201 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 467970 sc-eQTL 3.50e-01 -0.175 0.186 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 353275 sc-eQTL 7.82e-01 -0.0487 0.175 0.05 CD4_CTL L2
ENSG00000117000 RLF -116627 sc-eQTL 9.18e-01 0.02 0.193 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -486813 sc-eQTL 8.70e-01 0.03 0.183 0.05 CD4_CTL L2
ENSG00000127603 MACF1 963444 sc-eQTL 1.19e-02 -0.38 0.15 0.05 CD4_CTL L2
ENSG00000131236 CAP1 4527 sc-eQTL 1.11e-02 0.329 0.128 0.05 CD4_CTL L2
ENSG00000131238 PPT1 -52967 sc-eQTL 4.43e-01 0.156 0.202 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -463981 sc-eQTL 7.22e-01 0.0678 0.191 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -934928 sc-eQTL 9.68e-01 -0.00738 0.186 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -817603 sc-eQTL 8.70e-01 0.0261 0.16 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -405342 sc-eQTL 8.16e-01 -0.0403 0.173 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -432530 sc-eQTL 4.77e-01 0.133 0.187 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -213207 sc-eQTL 5.78e-04 0.619 0.177 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -647306 sc-eQTL 2.67e-01 -0.211 0.19 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 161249 sc-eQTL 5.50e-01 -0.145 0.241 0.063 PB L2
ENSG00000049089 COL9A2 -273053 sc-eQTL 9.26e-01 0.0199 0.213 0.063 PB L2
ENSG00000066136 NFYC -646888 sc-eQTL 4.10e-02 0.47 0.227 0.063 PB L2
ENSG00000084070 SMAP2 -300090 sc-eQTL 3.14e-01 0.169 0.167 0.063 PB L2
ENSG00000084072 PPIE 352578 sc-eQTL 5.41e-01 -0.133 0.217 0.063 PB L2
ENSG00000084073 ZMPSTE24 -213476 sc-eQTL 4.34e-01 -0.154 0.197 0.063 PB L2
ENSG00000090621 PABPC4 467970 sc-eQTL 3.78e-01 0.116 0.131 0.063 PB L2
ENSG00000116985 BMP8B 255895 sc-eQTL 7.39e-01 -0.0507 0.152 0.063 PB L2
ENSG00000117000 RLF -116627 sc-eQTL 4.05e-01 0.203 0.243 0.063 PB L2
ENSG00000117010 ZNF684 -486813 sc-eQTL 7.18e-01 0.0735 0.203 0.063 PB L2
ENSG00000127603 MACF1 963444 sc-eQTL 4.88e-02 0.402 0.202 0.063 PB L2
ENSG00000131236 CAP1 4527 sc-eQTL 3.78e-01 0.18 0.204 0.063 PB L2
ENSG00000131238 PPT1 -52967 sc-eQTL 4.56e-01 0.167 0.223 0.063 PB L2
ENSG00000164002 EXO5 -463981 sc-eQTL 4.38e-01 0.174 0.223 0.063 PB L2
ENSG00000171793 CTPS1 -934928 sc-eQTL 2.29e-02 -0.529 0.23 0.063 PB L2
ENSG00000179862 CITED4 -817603 sc-eQTL 7.53e-01 -0.0654 0.208 0.063 PB L2
ENSG00000187815 ZFP69 -432530 sc-eQTL 8.17e-02 0.38 0.216 0.063 PB L2
ENSG00000198754 OXCT2 273412 sc-eQTL 3.50e-02 0.411 0.193 0.063 PB L2
ENSG00000259943 AL050341.2 -213207 sc-eQTL 5.17e-01 -0.15 0.231 0.063 PB L2
ENSG00000272145 NFYC-AS1 -647306 sc-eQTL 5.82e-01 -0.12 0.218 0.063 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution


Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF


Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -213476 3.58e-06 3.92e-06 4.65e-07 2.02e-06 4.56e-07 7.86e-07 1.59e-06 4.04e-07 1.81e-06 1.03e-06 2.49e-06 1.31e-06 3.39e-06 1.28e-06 1.14e-06 1.07e-06 1.1e-06 1.34e-06 9.43e-07 1.29e-06 6.48e-07 2.8e-06 2.42e-06 9.61e-07 3.74e-06 9.84e-07 1.21e-06 1.51e-06 1.93e-06 1.9e-06 1.82e-06 2.95e-07 3.27e-07 1.22e-06 1.35e-06 6.22e-07 7.59e-07 3.71e-07 1.07e-06 3.98e-07 2.82e-07 4.22e-06 5.87e-07 1.3e-07 2.83e-07 3.51e-07 2.71e-07 4.88e-08 1.6e-07
ENSG00000117000 \N -116627 7.7e-06 9.59e-06 7.35e-07 4.3e-06 1.7e-06 2.55e-06 8.61e-06 1.18e-06 4.81e-06 3.49e-06 8.62e-06 3.52e-06 1.07e-05 3.79e-06 2.21e-06 3.98e-06 3.09e-06 4.01e-06 1.81e-06 1.51e-06 2.75e-06 7e-06 5.53e-06 1.88e-06 9.83e-06 2.01e-06 2.92e-06 1.71e-06 6.12e-06 6.39e-06 3.52e-06 5.76e-07 4.91e-07 2.15e-06 2.47e-06 1.16e-06 1.06e-06 5e-07 1.08e-06 8.05e-07 3.06e-07 1.11e-05 8.05e-07 1.74e-07 3.81e-07 1.25e-06 1.03e-06 3.34e-07 3.25e-07
ENSG00000117016 \N -620922 3.21e-07 2.3e-07 6.57e-08 2.54e-07 1.03e-07 7.75e-08 1.9e-07 5.66e-08 1.44e-07 8.53e-08 1.66e-07 1.08e-07 2.38e-07 8.66e-08 1.01e-07 7.49e-08 4.18e-08 1.44e-07 7.29e-08 8.69e-08 1.22e-07 1.56e-07 1.68e-07 2.83e-08 2.02e-07 1.26e-07 1.17e-07 1.26e-07 1.31e-07 1.24e-07 1.22e-07 3.6e-08 4.02e-08 9.81e-08 4.78e-08 2.69e-08 6.77e-08 9.23e-08 5.84e-08 7.65e-08 5.39e-08 2.41e-07 5.12e-08 1.24e-08 5.19e-08 6.98e-09 1.21e-07 3.89e-09 4.81e-08
ENSG00000131238 \N -52967 1.41e-05 1.99e-05 2.23e-06 9.48e-06 2.38e-06 5.91e-06 1.75e-05 2.18e-06 1.37e-05 6.76e-06 1.79e-05 7.07e-06 2.5e-05 5.8e-06 4.78e-06 7.43e-06 7.26e-06 9.78e-06 3.6e-06 3.09e-06 6.5e-06 1.28e-05 1.32e-05 3.67e-06 2.34e-05 4.45e-06 7.14e-06 5.26e-06 1.37e-05 1.18e-05 9.59e-06 9.88e-07 1.11e-06 3.3e-06 6.2e-06 2.77e-06 1.87e-06 1.99e-06 2.08e-06 1.27e-06 8.99e-07 2e-05 1.62e-06 1.59e-07 7.62e-07 2.2e-06 1.79e-06 7.02e-07 4.64e-07
ENSG00000259943 \N -213207 3.53e-06 3.85e-06 4.65e-07 2.02e-06 4.59e-07 7.86e-07 1.61e-06 4.05e-07 1.8e-06 1.09e-06 2.49e-06 1.31e-06 3.5e-06 1.24e-06 1.14e-06 1.07e-06 1.1e-06 1.34e-06 9.43e-07 1.27e-06 6.48e-07 2.8e-06 2.42e-06 1.02e-06 3.74e-06 9.49e-07 1.21e-06 1.51e-06 1.93e-06 1.9e-06 1.84e-06 2.95e-07 3.27e-07 1.22e-06 1.35e-06 6.22e-07 7.76e-07 3.71e-07 1.07e-06 3.98e-07 2.82e-07 4.22e-06 5.87e-07 1.3e-07 2.83e-07 3.51e-07 2.71e-07 4.88e-08 1.6e-07