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Genes within 1Mb (chr1:40018952:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000043514 TRIT1 135441 sc-eQTL 7.36e-01 -0.0649 0.192 0.05 CD4_CTL L2
ENSG00000049089 COL9A2 -298861 sc-eQTL 6.67e-01 -0.0636 0.148 0.05 CD4_CTL L2
ENSG00000066136 NFYC -672696 sc-eQTL 5.92e-01 0.109 0.203 0.05 CD4_CTL L2
ENSG00000084070 SMAP2 -325898 sc-eQTL 4.78e-01 -0.0937 0.132 0.05 CD4_CTL L2
ENSG00000084072 PPIE 326770 sc-eQTL 6.69e-01 -0.0861 0.201 0.05 CD4_CTL L2
ENSG00000084073 ZMPSTE24 -239284 sc-eQTL 8.22e-01 -0.0454 0.201 0.05 CD4_CTL L2
ENSG00000090621 PABPC4 442162 sc-eQTL 3.50e-01 -0.175 0.186 0.05 CD4_CTL L2
ENSG00000116983 HPCAL4 327467 sc-eQTL 7.82e-01 -0.0487 0.175 0.05 CD4_CTL L2
ENSG00000117000 RLF -142435 sc-eQTL 9.18e-01 0.02 0.193 0.05 CD4_CTL L2
ENSG00000117010 ZNF684 -512621 sc-eQTL 8.70e-01 0.03 0.183 0.05 CD4_CTL L2
ENSG00000127603 MACF1 937636 sc-eQTL 1.19e-02 -0.38 0.15 0.05 CD4_CTL L2
ENSG00000131236 CAP1 -21281 sc-eQTL 1.11e-02 0.329 0.128 0.05 CD4_CTL L2
ENSG00000131238 PPT1 -78775 sc-eQTL 4.43e-01 0.156 0.202 0.05 CD4_CTL L2
ENSG00000164002 EXO5 -489789 sc-eQTL 7.22e-01 0.0678 0.191 0.05 CD4_CTL L2
ENSG00000168653 NDUFS5 992634 sc-eQTL 5.79e-01 -0.101 0.182 0.05 CD4_CTL L2
ENSG00000171793 CTPS1 -960736 sc-eQTL 9.68e-01 -0.00738 0.186 0.05 CD4_CTL L2
ENSG00000179862 CITED4 -843411 sc-eQTL 8.70e-01 0.0261 0.16 0.05 CD4_CTL L2
ENSG00000187801 ZFP69B -431150 sc-eQTL 8.16e-01 -0.0403 0.173 0.05 CD4_CTL L2
ENSG00000187815 ZFP69 -458338 sc-eQTL 4.77e-01 0.133 0.187 0.05 CD4_CTL L2
ENSG00000259943 AL050341.2 -239015 sc-eQTL 5.78e-04 0.619 0.177 0.05 CD4_CTL L2
ENSG00000272145 NFYC-AS1 -673114 sc-eQTL 2.67e-01 -0.211 0.19 0.05 CD4_CTL L2
ENSG00000043514 TRIT1 135441 sc-eQTL 5.50e-01 -0.145 0.241 0.063 PB L2
ENSG00000049089 COL9A2 -298861 sc-eQTL 9.26e-01 0.0199 0.213 0.063 PB L2
ENSG00000066136 NFYC -672696 sc-eQTL 4.10e-02 0.47 0.227 0.063 PB L2
ENSG00000084070 SMAP2 -325898 sc-eQTL 3.14e-01 0.169 0.167 0.063 PB L2
ENSG00000084072 PPIE 326770 sc-eQTL 5.41e-01 -0.133 0.217 0.063 PB L2
ENSG00000084073 ZMPSTE24 -239284 sc-eQTL 4.34e-01 -0.154 0.197 0.063 PB L2
ENSG00000090621 PABPC4 442162 sc-eQTL 3.78e-01 0.116 0.131 0.063 PB L2
ENSG00000116985 BMP8B 230087 sc-eQTL 7.39e-01 -0.0507 0.152 0.063 PB L2
ENSG00000117000 RLF -142435 sc-eQTL 4.05e-01 0.203 0.243 0.063 PB L2
ENSG00000117010 ZNF684 -512621 sc-eQTL 7.18e-01 0.0735 0.203 0.063 PB L2
ENSG00000127603 MACF1 937636 sc-eQTL 4.88e-02 0.402 0.202 0.063 PB L2
ENSG00000131236 CAP1 -21281 sc-eQTL 3.78e-01 0.18 0.204 0.063 PB L2
ENSG00000131238 PPT1 -78775 sc-eQTL 4.56e-01 0.167 0.223 0.063 PB L2
ENSG00000164002 EXO5 -489789 sc-eQTL 4.38e-01 0.174 0.223 0.063 PB L2
ENSG00000168653 NDUFS5 992634 sc-eQTL 9.64e-01 0.00497 0.111 0.063 PB L2
ENSG00000171793 CTPS1 -960736 sc-eQTL 2.29e-02 -0.529 0.23 0.063 PB L2
ENSG00000179862 CITED4 -843411 sc-eQTL 7.53e-01 -0.0654 0.208 0.063 PB L2
ENSG00000187815 ZFP69 -458338 sc-eQTL 8.17e-02 0.38 0.216 0.063 PB L2
ENSG00000198754 OXCT2 247604 sc-eQTL 3.50e-02 0.411 0.193 0.063 PB L2
ENSG00000259943 AL050341.2 -239015 sc-eQTL 5.17e-01 -0.15 0.231 0.063 PB L2
ENSG00000272145 NFYC-AS1 -673114 sc-eQTL 5.82e-01 -0.12 0.218 0.063 PB L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000084073 \N -239284 1.23e-06 9.39e-07 3e-07 1.1e-06 2.33e-07 4.69e-07 1.61e-06 3.38e-07 1.27e-06 3.71e-07 1.74e-06 5.98e-07 2.19e-06 2.79e-07 4.31e-07 7.78e-07 8.42e-07 5.82e-07 6.18e-07 6.97e-07 4.39e-07 1.22e-06 8.59e-07 6.06e-07 2.18e-06 3.66e-07 7.31e-07 7.27e-07 1.28e-06 1.27e-06 6.97e-07 3.77e-08 2.14e-07 6.68e-07 6.24e-07 4.15e-07 5.03e-07 1.5e-07 3.52e-07 8.76e-08 2.83e-07 1.6e-06 5.58e-08 9.66e-08 1.62e-07 1.28e-07 1.88e-07 8.96e-08 5.55e-08
ENSG00000117000 \N -142435 2.77e-06 2.52e-06 2.85e-07 1.76e-06 4.39e-07 7.92e-07 1.82e-06 5.72e-07 1.74e-06 7.24e-07 2.47e-06 1.42e-06 3.39e-06 1.39e-06 4.72e-07 1.2e-06 1.1e-06 1.68e-06 6.65e-07 7.96e-07 7.37e-07 2.25e-06 2.33e-06 9.91e-07 3.89e-06 1.17e-06 1.22e-06 1.4e-06 1.95e-06 1.84e-06 1.65e-06 2.42e-07 4.74e-07 1.26e-06 1.02e-06 6.66e-07 8.6e-07 3.37e-07 9.27e-07 2.29e-07 2.87e-07 3.33e-06 4.02e-07 1.96e-07 3.81e-07 3.09e-07 3.69e-07 2.62e-07 2.05e-07
ENSG00000117016 \N -646730 3.07e-07 1.53e-07 5.35e-08 2.26e-07 9.87e-08 8.45e-08 2.1e-07 5.85e-08 1.5e-07 6.75e-08 1.61e-07 1.11e-07 2.24e-07 8.07e-08 5.43e-08 7.89e-08 4.18e-08 1.56e-07 7.18e-08 5.07e-08 1.27e-07 1.39e-07 1.64e-07 2.68e-08 2.17e-07 1.26e-07 1.12e-07 1.1e-07 1.31e-07 1.05e-07 1.21e-07 3.54e-08 3.13e-08 9.3e-08 3.71e-08 2.95e-08 4.41e-08 9.36e-08 6.41e-08 3.6e-08 5.42e-08 1.55e-07 5.24e-08 1.44e-08 2.64e-08 1.55e-08 1.15e-07 1.91e-09 5.02e-08
ENSG00000131238 \N -78775 4.64e-06 5.07e-06 7.66e-07 3.22e-06 1.35e-06 1.71e-06 5.37e-06 9.98e-07 4.93e-06 2.22e-06 5.78e-06 3.54e-06 7.51e-06 1.97e-06 1.37e-06 3.22e-06 1.84e-06 3.55e-06 1.36e-06 9.85e-07 2.98e-06 4.79e-06 4.56e-06 1.43e-06 8.07e-06 1.76e-06 2.57e-06 1.77e-06 4.51e-06 4.47e-06 2.83e-06 6.26e-07 6.1e-07 1.57e-06 2.13e-06 9.01e-07 9.83e-07 5.11e-07 9.24e-07 3.63e-07 4.16e-07 6.1e-06 3.83e-07 1.46e-07 3.58e-07 8.63e-07 7.75e-07 5.21e-07 2.87e-07
ENSG00000259943 \N -239015 1.23e-06 9.39e-07 3e-07 1.11e-06 2.33e-07 4.69e-07 1.61e-06 3.5e-07 1.25e-06 3.71e-07 1.74e-06 5.98e-07 2.19e-06 2.81e-07 4.31e-07 7.78e-07 8.42e-07 5.82e-07 6.4e-07 6.97e-07 4.39e-07 1.22e-06 8.35e-07 6.06e-07 2.18e-06 3.66e-07 7.31e-07 7.27e-07 1.28e-06 1.27e-06 6.97e-07 3.77e-08 2.16e-07 6.68e-07 6.24e-07 4.18e-07 5.03e-07 1.5e-07 3.43e-07 8.76e-08 2.83e-07 1.6e-06 5.58e-08 9.66e-08 1.62e-07 1.28e-07 1.88e-07 8.96e-08 5.55e-08
ENSG00000261798 \N 229976 1.29e-06 9.74e-07 2.88e-07 1.17e-06 2.71e-07 4.78e-07 1.58e-06 3.66e-07 1.38e-06 4.15e-07 1.84e-06 6.2e-07 2.34e-06 2.87e-07 4.91e-07 8.02e-07 9.2e-07 6.25e-07 7.25e-07 6.8e-07 4.57e-07 1.28e-06 8.92e-07 6.21e-07 2.22e-06 3.79e-07 7.97e-07 6.88e-07 1.38e-06 1.34e-06 6.78e-07 3.86e-08 2e-07 7.03e-07 5.6e-07 4.47e-07 5.58e-07 1.5e-07 3.79e-07 9.13e-08 2.89e-07 1.68e-06 5.81e-08 1.06e-07 1.87e-07 1.25e-07 1.87e-07 7.81e-08 5.39e-08